Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Forward (+)

72363525 .. 72366663

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGCTTGAGCGTGGTGAGGGCGTCGCGGTTCCAAGCCTTGGGGTTTGGATTCGGGTTGGGGTGGCTGCGGAGCGAGGAGGATGAATTCAACAATGCGAAGCTGAAAGTGACACGGCAGCAGGCAGGGGAGGAATCAACCATGCATGTCCCTCGCAAGCGTGCTCAGGACTATGACCACGATGACTCTCTTACTGAGAGCAACCCTGAGCTCCACTACAGCTTCCACTGTAACTATCAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.81

Weight (kDa)

6.4

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccII	CGCG	1 cut(s)	28
AciI	CCGC	2 cut(s)	28, 70
AcsI	RAATTY	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	4 cut(s)	6, 103, 211, 222
AluI	AGCT	4 cut(s)	6, 103, 211, 222
Alw21I	GWGCWC	2 cut(s)	166, 213
Ama87I	CYCGRG	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	67, 118
ApoI	RAATTY	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	166, 213
BbvI	GCAGC	2 cut(s)	54, 130
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BfaI	CTAG	1 cut(s)	310
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	68, 119
BlsI	GCNGC	2 cut(s)	69, 120
BmeT110I	CYCGRG	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	266
Bpu10I	CCTNAGC	2 cut(s)	165, 207
BpuEI	CTTGAG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	179, 186, 198
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	54, 130
Bsh1236I	CGCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	166, 213
BsiHKCI	CYCGRG	1 cut(s)	301
BslFI	GGGAC	2 cut(s)	134, 256
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	134, 256
BsoBI	CYCGRG	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	166, 213
BspACI	CCGC	2 cut(s)	28, 70
BspCNI	CTCAG	3 cut(s)	178, 187, 199
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	123, 158, 162
BstDEI	CTNAG	3 cut(s)	165, 195, 207
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	54, 130
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	123, 158, 162
CseI	GACGC	1 cut(s)	12
CviAII	CATG	2 cut(s)	142, 146
CviJI	RGCY	6 cut(s)	6, 38, 67, 103, 211, 222
CviKI_1	RGCY	6 cut(s)	6, 38, 67, 103, 211, 222
DdeI	CTNAG	3 cut(s)	165, 195, 207
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	2 cut(s)	147, 281
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	145, 149
FaiI	YATR	4 cut(s)	143, 147, 174, 281
FaqI	GGGAC	2 cut(s)	134, 256
FatI	CATG	2 cut(s)	141, 145
Fnu4HI	GCNGC	2 cut(s)	68, 119
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	68, 119
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	2 cut(s)	68, 119
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	145, 149
HinfI	GANTC	3 cut(s)	51, 134, 185
HphI	GGTGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	145, 279
HpyF3I	CTNAG	3 cut(s)	165, 195, 207
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	145, 149
LmnI	GCTCC	2 cut(s)	72, 216
LpnPI	CCDG	5 cut(s)	107, 111, 152, 219, 224
Lsp1109I	GCAGC	2 cut(s)	54, 130
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	109, 230
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	166, 213
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	12, 70, 73, 124, 162
Mph1103I	ATGCAT	2 cut(s)	147, 281
MseI	TTAA	1 cut(s)	257
MvnI	CGCG	1 cut(s)	28
NlaIII	CATG	2 cut(s)	145, 149
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	109
NsiI	ATGCAT	2 cut(s)	147, 281
NspI	RCATGY	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	51, 134
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	69, 120
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	68, 119
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	166, 213
SetI	ASST	4 cut(s)	8, 105, 213, 224
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	28, 70
SspMI	CTAG	1 cut(s)	310
SstI	GAGCTC	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	230
TasI	AATT	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	51, 134
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	67, 118
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	1 cut(s)	310
Zsp2I	ATGCAT	2 cut(s)	147, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.