Rh3BG373000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001799
Physical Location & Seq
Reverse (-)
47124558 .. 47126682
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG373000.1

Sequence Viewer

Length: 342 bp
ATGTTGATCATAGCTTGCAGATGCACTCATCATTGGTACAACGGCTTTCTCACAGAGTTGGAGTTTAACAGAATAGTAGATGTCCATGGTGTTCGGAATATGAAAGATCCTCGAGGTATAGAGACAATTCGGTCTGGTGGCTCACTCAAGGAGAAAGAAGTGTGGCGACTGTCAAGGAGGAAAGATGTGATGCACAGTGCGCTAAAAAGGATACTAGTTGGTTTAAAACAACATATCATCGAGTCAAATCTATGTTTTGTAGCTGTGTTGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.03

Weight (kDa)

9.87

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 130
AbsI CCTCGAGG 1 cut(s) 111
AclWI GGATC 1 cut(s) 101
AfaI GTAC 1 cut(s) 38
AhlI ACTAGT 1 cut(s) 214
AluBI AGCT 2 cut(s) 14, 263
AluI AGCT 2 cut(s) 14, 263
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 101
Ama87I CYCGRG 2 cut(s) 111, 331
AspLEI GCGC 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 111, 331
BceAI ACGGC 1 cut(s) 58
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 2 cut(s) 215, 340
BfuI GTATCC 1 cut(s) 204
BmeT110I CYCGRG 2 cut(s) 111, 331
BmsI GCATC 3 cut(s) 11, 180, 296
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 85
BsiHKCI CYCGRG 2 cut(s) 111, 331
BslFI GGGAC 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 286
BsoBI CYCGRG 2 cut(s) 111, 331
Bsp143I GATC 2 cut(s) 6, 106
Bsp19I CCATGG 1 cut(s) 85
BspPI GGATC 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 6, 106
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 171, 197
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 9, 109
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 6, 106
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 14, 45, 141, 263
CviKI_1 RGCY 4 cut(s) 14, 45, 141, 263
CviQI GTAC 1 cut(s) 37
DpnI GATC 2 cut(s) 8, 108
DpnII GATC 2 cut(s) 6, 106
DraI TTTAAA 1 cut(s) 225
DrdI GACNNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 85
Eco88I CYCGRG 2 cut(s) 111, 331
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 89
FaiI YATR 7 cut(s) 11, 87, 101, 119, 234, 253, 311
FaqI GGGAC 1 cut(s) 286
FatI CATG 1 cut(s) 85
FbaI TGATCA 1 cut(s) 6
FspBI CTAG 2 cut(s) 215, 340
GlaI GCGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 171, 197
HpyCH4V TGCA 4 cut(s) 18, 24, 193, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 2 cut(s) 6, 106
LpnPI CCDG 1 cut(s) 120
LweI GCATC 3 cut(s) 11, 180, 296
MaeI CTAG 2 cut(s) 215, 340
MalI GATC 2 cut(s) 8, 108
MboI GATC 2 cut(s) 6, 106
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 106
MluCI AATT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 3 cut(s) 107, 120, 171
Mph1103I ATGCAT 1 cut(s) 311
MseI TTAA 3 cut(s) 66, 224, 287
MwoI GCNNNNNNNGC 1 cut(s) 199
NcoI CCATGG 1 cut(s) 85
NdeII GATC 2 cut(s) 6, 106
NlaIII CATG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 111
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspXI VCTCGAGB 1 cut(s) 111
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 3 cut(s) 66, 224, 287
Sau3AI GATC 2 cut(s) 6, 106
SchI GAGTC 1 cut(s) 251
SetI ASST 3 cut(s) 16, 118, 265
SfaNI GCATC 3 cut(s) 11, 180, 296
Sfr274I CTCGAG 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 111, 146
SmoI CTYRAG 2 cut(s) 111, 146
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 1 cut(s) 126
SspMI CTAG 2 cut(s) 215, 340
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 171, 197
TaqI TCGA 2 cut(s) 112, 240
TaqII GACCGA 1 cut(s) 120
TasI AATT 1 cut(s) 126
Tru1I TTAA 3 cut(s) 66, 224, 287
Tru9I TTAA 3 cut(s) 66, 224, 287
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 2 cut(s) 215, 340
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.