Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Reverse (-)

13017498 .. 13018321

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG153100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGACCAAGGAGGAGAGGCTGGCATTAGTGAAAGCAGGGAGGGAGGAAAGAGGGAAGTACACAGCTAGAGCTGCTGTAAAACAGAAGAAGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTTTAGTTTGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

60

Amino Acids

6.82

Weight (kDa)

9.26

Isoelectric Point (pI)

22.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	26 - 59	2.3e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	65, 71
AluI	AGCT	2 cut(s)	65, 71
ApeKI	GCWGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	21, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	21, 129
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	4 cut(s)	19, 65, 71, 147
CviKI_1	RGCY	4 cut(s)	19, 65, 71, 147
CviQI	GTAC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	113, 144
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	5, 21, 132, 148
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	66
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	5 cut(s)	4, 9, 33, 37, 44
MwoI	GCNNNNNNNGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	115
PciI	ACATGT	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	72
SetI	ASST	3 cut(s)	67, 73, 93
SgeI	CNNG	8 cut(s)	19, 32, 48, 78, 124, 131, 140, 175
Sse9I	AATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	6
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	57
TseI	GCWGC	1 cut(s)	71
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.