Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Forward (+)

50065182 .. 50067703

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1400100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCGAAGTCGAAGAAGCAGTTGATGTCTTCAGCTCCGTGGAGGGTGGAAGAAGAGGCGGAGGATGAATTCCCAGAAGGGAAGCTTAAGGTGACGAGTCAGCCAGGGTCGACTCCAACCATGCACGTCCCTCGCAAGAAAACCAAGCGCTCTCAGGACCAAGACGATCAAGATTCTCTCACGGAGATCGATCCTGAGCTCCGCTACAGCTTCCAGCGCAACTTTCAGTTCCTTCAACGGGTGTTCAGCATTGATACTGTCGTGAAACCTCTTCCTCCCGCCATGGCATACAATGTCTCCCGCAACTTGAACTTCTTCACTCGTATTTTCACACAGTTCTTTGATCCTGAAGGTATTGCAAATGCGCAAAAATCACTTGGGCTAGGACAGGAAGAAAAAGTTCGTAAAGTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.98

Weight (kDa)

9.22

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	4 cut(s)	59, 202, 279, 301
AclWI	GGATC	2 cut(s)	185, 338
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	15, 369
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	236, 310
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	4 cut(s)	35, 85, 199, 210
AluI	AGCT	4 cut(s)	35, 85, 199, 210
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	185, 338
Aor51HI	AGCGCT	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	2 cut(s)	314, 399
AspLEI	GCGC	3 cut(s)	150, 219, 367
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	151
BfrI	CTTAAG	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	38, 104, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	38, 104, 282
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	167, 186
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	166, 186, 190, 343
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	4 cut(s)	59, 202, 279, 301
BspCNI	CTCAG	2 cut(s)	166, 187
BspDI	ATCGAT	1 cut(s)	189
BspPI	GGATC	2 cut(s)	185, 338
BspTI	CTTAAG	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	38, 104, 282
BssMI	GATC	4 cut(s)	166, 186, 190, 343
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	259, 336
Bst6I	CTCTTC	2 cut(s)	48, 276
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	153, 195
BstDSI	CCRYGG	2 cut(s)	38, 282
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	3 cut(s)	150, 219, 367
BstKTI	GATC	4 cut(s)	169, 189, 193, 346
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	4 cut(s)	166, 186, 190, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	2 cut(s)	38, 282
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	70
CfoI	GCGC	3 cut(s)	150, 219, 367
Cfr13I	GGNCC	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	189
CviAII	CATG	2 cut(s)	121, 283
CviJI	RGCY	6 cut(s)	35, 85, 103, 199, 210, 382
CviKI_1	RGCY	6 cut(s)	35, 85, 103, 199, 210, 382
DdeI	CTNAG	2 cut(s)	153, 195
DpnI	GATC	4 cut(s)	168, 188, 192, 345
DpnII	GATC	4 cut(s)	166, 186, 190, 343
Eam1104I	CTCTTC	2 cut(s)	48, 276
EarI	CTCTTC	2 cut(s)	48, 276
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	157
Eco47III	AGCGCT	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	15, 369
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	124, 286
FaiI	YATR	3 cut(s)	122, 284, 289
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	2 cut(s)	120, 282
FauI	CCCGC	2 cut(s)	286, 308
FblI	GTMKAC	1 cut(s)	110
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	383
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	3 cut(s)	149, 218, 366
HaeII	RGCGCY	1 cut(s)	151
HhaI	GCGC	3 cut(s)	150, 219, 367
Hin1II	CATG	2 cut(s)	124, 286
Hin6I	GCGC	3 cut(s)	148, 217, 365
HinP1I	GCGC	3 cut(s)	148, 217, 365
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	97, 112, 173
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188III	TCNNGA	5 cut(s)	155, 170, 194, 262, 347
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	71, 242, 344
HpyCH4III	ACNGT	2 cut(s)	259, 336
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	124, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	2 cut(s)	153, 195
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	124, 286
HspAI	GCGC	3 cut(s)	148, 217, 365
Kzo9I	GATC	4 cut(s)	166, 186, 190, 343
LmnI	GCTCC	2 cut(s)	40, 204
LpnPI	CCDG	8 cut(s)	87, 90, 117, 140, 207, 227, 360, 374
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	168, 188, 192, 345
MboI	GATC	4 cut(s)	166, 186, 190, 343
MboII	GAAGA	7 cut(s)	21, 25, 62, 65, 263, 307, 404
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	106, 106
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	6 cut(s)	36, 49, 55, 141, 279, 285
MroXI	GAANNNNTTC	2 cut(s)	314, 399
MseI	TTAA	1 cut(s)	87
MspCI	CTTAAG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	166, 186, 190, 343
NlaIII	CATG	2 cut(s)	124, 286
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PdmI	GAANNNNTTC	2 cut(s)	314, 399
PfeI	GAWTC	1 cut(s)	173
PleI	GAGTC	2 cut(s)	105, 106
PpsI	GAGTC	2 cut(s)	105, 106
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	166, 186, 190, 343
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	106, 106
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	8 cut(s)	37, 87, 93, 129, 201, 212, 271, 355
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	4 cut(s)	59, 202, 279, 301
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	259, 336
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	5, 11, 110, 189
TasI	AATT	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	2 cut(s)	27, 197
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	110
XmnI	GAANNNNTTC	2 cut(s)	314, 399
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.