Rh7DG263500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001799
Physical Location & Seq
Forward (+)
28033982 .. 28034776
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG263500.1

Sequence Viewer

Length: 171 bp
ATGCATGTCCCTCGCAAGCGCGCTCAGGACTATGACCACGATGACTCTCTTACTGAGATCGACCATGAGCTCCGCTACAGCTTCCACTGTAACTATCAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.66

Weight (kDa)

6.38

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 73
AluBI AGCT 2 cut(s) 70, 81
AluI AGCT 2 cut(s) 70, 81
Alw21I GWGCWC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 160
AspLEI GCGC 2 cut(s) 21, 23
AvaI CYCGRG 1 cut(s) 160
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BcgI CGANNNNNNTGC 1 cut(s) 27
BfaI CTAG 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 160
BmsI GCATC 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 24
BseMII CTCAG 2 cut(s) 38, 45
BsePI GCGCGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 37, 46
BspFNI CGCG 1 cut(s) 21
BssHII GCGCGC 1 cut(s) 19
BssMI GATC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 17, 21
BstDEI CTNAG 2 cut(s) 24, 54
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 21, 23
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 17, 21
CfoI GCGC 2 cut(s) 21, 23
CviAII CATG 2 cut(s) 5, 65
CviJI RGCY 2 cut(s) 70, 81
CviKI_1 RGCY 2 cut(s) 70, 81
DdeI CTNAG 2 cut(s) 24, 54
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 70
EcoT22I ATGCAT 2 cut(s) 6, 140
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 2 cut(s) 8, 68
FaiI YATR 4 cut(s) 6, 33, 66, 140
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 4, 64
FriOI GRGCYC 1 cut(s) 72
FspBI CTAG 1 cut(s) 169
GlaI GCGC 2 cut(s) 20, 22
HhaI GCGC 2 cut(s) 21, 23
Hin1II CATG 2 cut(s) 8, 68
Hin6I GCGC 2 cut(s) 19, 21
HinP1I GCGC 2 cut(s) 19, 21
HinfI GANTC 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 4, 138
HpyF3I CTNAG 2 cut(s) 24, 54
Hsp92II CATG 2 cut(s) 8, 68
HspAI GCGC 2 cut(s) 19, 21
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 2 cut(s) 11, 83
LweI GCATC 1 cut(s) 125
MaeI CTAG 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 1 cut(s) 21
Mph1103I ATGCAT 2 cut(s) 6, 140
MseI TTAA 1 cut(s) 116
MvnI CGCG 1 cut(s) 21
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 8, 68
NsiI ATGCAT 2 cut(s) 6, 140
NspI RCATGY 1 cut(s) 8
PauI GCGCGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 72
PteI GCGCGC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 72
SetI ASST 2 cut(s) 72, 83
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 76
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 169
SstI GAGCTC 1 cut(s) 72
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 60
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 1 cut(s) 92
TspRI CASTG 1 cut(s) 92
XceI RCATGY 1 cut(s) 8
XspI CTAG 1 cut(s) 169
Zsp2I ATGCAT 2 cut(s) 6, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.