RchiOBHm_Chr7g0216321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001799
Physical Location & Seq
Reverse (-)
33904022 .. 33906521
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19355

Sequence Viewer

Length: 423 bp
ATGTCGAAGGCGAAGAAGGAGCTGATGGCGTCAGCGCCGTGGAGGGTACAAGAAGAGGAGGAAGAATTCAGCGACGCGAAGCTGAAAGTGACACGGCAGCAGGCGGGGGCGGAATCAACCATGCACGTCCCTCGCAGGAAAACCAAGCGCGCTCAGGACTATCAAGACGACGACGACGACTCTCTCACTGAGATCGACCCTGAGCTCCGCTACAGCTTCCAACGTAACTATCAGTTCCTTCAACGAGTTTTTAGCATTGATACTATCGTGAAACCTCTTCCGGCTTCCATGGCTTACAATGTCTCCCGCAACTTGAACTTCTTCACTCGCATTTTCACCCAGTTTTTTGATCCTGAAGGTATAGCAAATGCACAGAAATCACTCGGAATAGGACAGGAAGAGAAAGCCCGTCGCGTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.36

Weight (kDa)

7.93

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 77, 150, 414
AciI CCGC 4 cut(s) 104, 110, 208, 307
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 48
AgsI TTSAA 2 cut(s) 242, 316
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 4 cut(s) 22, 82, 205, 216
AluI AGCT 4 cut(s) 22, 82, 205, 216
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 3 cut(s) 37, 150, 152
AsuHPI GGTGA 1 cut(s) 328
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 19
BceAI ACGGC 2 cut(s) 22, 110
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 307
BfmI CTRYAG 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
Bpu10I CCTNAGC 2 cut(s) 153, 201
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 38, 288
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bse1I ACTGG 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 38, 288
BseMII CTCAG 3 cut(s) 167, 180, 192
BseNI ACTGG 1 cut(s) 340
BsePI GCGCGC 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 3 cut(s) 77, 150, 414
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 281, 418
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 192, 349
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 4 cut(s) 104, 110, 208, 307
BspCNI CTCAG 3 cut(s) 166, 181, 193
BspFNI CGCG 3 cut(s) 77, 150, 414
BspPI GGATC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 38, 288
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 2 cut(s) 192, 349
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 288
Bst6I CTCTTC 3 cut(s) 48, 282, 393
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 102, 150
BstDEI CTNAG 3 cut(s) 153, 189, 201
BstDSI CCRYGG 2 cut(s) 38, 288
BstFNI CGCG 3 cut(s) 77, 150, 414
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 3 cut(s) 37, 150, 152
BstKTI GATC 2 cut(s) 195, 352
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 2 cut(s) 192, 349
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 211
BstUI CGCG 3 cut(s) 77, 150, 414
BstV1I GCAGC 1 cut(s) 109
BtgI CCRYGG 2 cut(s) 38, 288
BtrI CACGTC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 102, 150
CfoI GCGC 3 cut(s) 37, 150, 152
CseI GACGC 3 cut(s) 18, 83, 403
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 121, 289
CviJI RGCY 7 cut(s) 22, 82, 205, 216, 284, 293, 407
CviKI_1 RGCY 7 cut(s) 22, 82, 205, 216, 284, 293, 407
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 153, 189, 201
DpnI GATC 2 cut(s) 194, 351
DpnII GATC 2 cut(s) 192, 349
Eam1104I CTCTTC 3 cut(s) 48, 282, 393
EarI CTCTTC 3 cut(s) 48, 282, 393
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 124, 292
FaiI YATR 3 cut(s) 122, 290, 362
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 120, 288
FauI CCCGC 2 cut(s) 97, 314
Fnu4HI GCNGC 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 3 cut(s) 36, 149, 151
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 2 cut(s) 281, 418
HgaI GACGC 3 cut(s) 18, 83, 403
HhaI GCGC 3 cut(s) 37, 150, 152
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 124, 292
Hin6I GCGC 3 cut(s) 35, 148, 150
HinP1I GCGC 3 cut(s) 35, 148, 150
HinfI GANTC 2 cut(s) 113, 179
HpaII CCGG 2 cut(s) 281, 418
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 386
Hpy188III TCNNGA 4 cut(s) 155, 164, 268, 353
Hpy99I CGWCG 5 cut(s) 77, 173, 176, 179, 414
HpyAV CCTTC 3 cut(s) 10, 248, 350
HpyCH4IV ACGT 2 cut(s) 126, 223
HpyCH4V TGCA 2 cut(s) 124, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 153, 189, 201
HpySE526I ACGT 2 cut(s) 126, 223
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 124, 292
HspAI GCGC 3 cut(s) 35, 148, 150
Kzo9I GATC 2 cut(s) 192, 349
LmnI GCTCC 2 cut(s) 19, 210
LpnPI CCDG 8 cut(s) 86, 121, 140, 213, 294, 353, 366, 380
Lsp1109I GCAGC 1 cut(s) 109
MaeII ACGT 2 cut(s) 126, 223
MaeIII GTNAC 2 cut(s) 88, 224
MalI GATC 2 cut(s) 194, 351
MboI GATC 2 cut(s) 192, 349
MboII GAAGA 6 cut(s) 25, 65, 74, 269, 313, 410
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 5 cut(s) 36, 49, 52, 141, 285
MroXI GAANNNNTTC 1 cut(s) 320
MspI CCGG 2 cut(s) 281, 418
MvnI CGCG 3 cut(s) 77, 150, 414
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 288
NdeII GATC 2 cut(s) 192, 349
NlaIII CATG 2 cut(s) 124, 292
NmuCI GTSAC 1 cut(s) 88
PauI GCGCGC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 207
PteI GCGCGC 1 cut(s) 148
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 1 cut(s) 207
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 192, 349
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 207
SetI ASST 8 cut(s) 24, 84, 129, 207, 218, 226, 277, 361
SfcI CTRYAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 65
SsiI CCGC 4 cut(s) 104, 110, 208, 307
SstI GAGCTC 1 cut(s) 207
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 2 cut(s) 129, 226
TaqI TCGA 2 cut(s) 5, 195
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 88
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.