Rmu_sc0043009.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0043009.1
OG0001799
Physical Location & Seq
Forward (+)
977 .. 1186
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0043009.1_g000001.1.cds

Sequence Viewer

Length: 210 bp
atgtcgaaggcgaagaaggagctgatggcgtcagcgccgtggagggtacaagaagaggaggaagaattcagcgacgcgaagctgaaagtgacacggcagcaggcgggggcggaatcaaccatgcacgtccctcgcaagaaaaccaagcgcgctcaggactatcaagacgacgacgactctctcactgagatcgaccctgagctccgctac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.17

Weight (kDa)

5.13

Isoelectric Point (pI)

76.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 77, 150
AciI CCGC 3 cut(s) 104, 110, 205
AcsI RAATTY 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 48
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 3 cut(s) 22, 82, 202
AluI AGCT 3 cut(s) 22, 82, 202
Alw21I GWGCWC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 3 cut(s) 37, 150, 152
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 19
BceAI ACGGC 2 cut(s) 22, 110
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 127
Bpu10I CCTNAGC 2 cut(s) 153, 198
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 38
BseMII CTCAG 3 cut(s) 167, 177, 189
BsePI GCGCGC 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 77, 150
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 3 cut(s) 104, 110, 205
BspCNI CTCAG 3 cut(s) 166, 178, 190
BspFNI CGCG 2 cut(s) 77, 150
BssECI CCNNGG 1 cut(s) 38
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 102, 150
BstDEI CTNAG 3 cut(s) 153, 186, 198
BstDSI CCRYGG 1 cut(s) 38
BstFNI CGCG 2 cut(s) 77, 150
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 3 cut(s) 37, 150, 152
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstUI CGCG 2 cut(s) 77, 150
BstV1I GCAGC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 38
BtrI CACGTC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 102, 150
CfoI GCGC 3 cut(s) 37, 150, 152
CseI GACGC 2 cut(s) 18, 83
Csp6I GTAC 1 cut(s) 47
CviAII CATG 1 cut(s) 121
CviJI RGCY 3 cut(s) 22, 82, 202
CviKI_1 RGCY 3 cut(s) 22, 82, 202
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 153, 186, 198
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 120
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 3 cut(s) 36, 149, 151
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 38
HgaI GACGC 2 cut(s) 18, 83
HhaI GCGC 3 cut(s) 37, 150, 152
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 3 cut(s) 35, 148, 150
HinP1I GCGC 3 cut(s) 35, 148, 150
HinfI GANTC 2 cut(s) 113, 176
Hpy188III TCNNGA 2 cut(s) 155, 164
Hpy99I CGWCG 3 cut(s) 77, 173, 176
HpyAV CCTTC 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 153, 186, 198
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 3 cut(s) 35, 148, 150
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 19, 207
LpnPI CCDG 2 cut(s) 86, 140
Lsp1109I GCAGC 1 cut(s) 109
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 3 cut(s) 25, 65, 74
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 36, 49, 52, 141
MvnI CGCG 2 cut(s) 77, 150
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 88
PauI GCGCGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 204
PteI GCGCGC 1 cut(s) 148
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 1 cut(s) 204
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 24, 84, 129, 204
Sse9I AATT 1 cut(s) 65
SsiI CCGC 3 cut(s) 104, 110, 205
SstI GAGCTC 1 cut(s) 204
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 5, 192
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 88
TspRI CASTG 1 cut(s) 190
XapI RAATTY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.