Prupe.1G547300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001799
Physical Location & Seq
Forward (+)
44736213 .. 44738474
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G547300.1

Sequence Viewer

Length: 417 bp
ATGTCGAAGACAAAGAAGCAGTTGATGTCTTCAGCTCCATGGAGGGTTGAAGAAGAGGCTGAAGATGAATTCCAAGACGCGAAGCTTAAAGTGACAAGCCAGCCAGGGTCCACTCCAACCATGCACGTTCCTAAAAAGAAAACGAAGCGCTCCAAAGACCAAGATTATGAAGACTCTCTCACTGAGATCGACCCTGAGCTCCGCTATAGCTTCCAGCGTAACTTTCAGTTCCTTCAACGGGTTTTTAGCATCGACACTGTTGTGAAACCTCTTCCACCTGTCATGGCGTACAATGTCTCCCGCAACTTGAACTTCTTCACTCGTATTTTCACACAATTTTTTGATCCTGAAGGTATTGCAAGTGCGCAGAAATCACTTGGGTTAGGGCAGGAAGAAAAAGTTCGTAAAGTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.05

Weight (kDa)

9.33

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 366
AccII CGCG 1 cut(s) 80
AciI CCGC 2 cut(s) 202, 301
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 3 cut(s) 15, 81, 369
AfaI GTAC 1 cut(s) 290
AfeI AGCGCT 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 3 cut(s) 50, 236, 310
AjnI CCWGG 1 cut(s) 103
AleI CACNNNNGTG 1 cut(s) 260
AluBI AGCT 4 cut(s) 35, 85, 199, 210
AluI AGCT 4 cut(s) 35, 85, 199, 210
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 149
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 2 cut(s) 314, 399
AspLEI GCGC 2 cut(s) 150, 367
AspS9I GGNCC 1 cut(s) 108
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 3 cut(s) 14, 21, 177
Bbv12I GWGCWC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 301
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 3 cut(s) 14, 21, 177
Bpu10I CCTNAGC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 38, 104
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 38, 104
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 174, 186
Bsh1236I CGCG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 186, 343
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 2 cut(s) 202, 301
BspCNI CTCAG 2 cut(s) 175, 187
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 38, 104
BssMI GATC 2 cut(s) 186, 343
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 48, 276
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 183, 195
BstDSI CCRYGG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 2 cut(s) 150, 367
BstKTI GATC 2 cut(s) 189, 346
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 186, 343
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 80
BstV2I GAAGAC 3 cut(s) 14, 21, 177
BtgI CCRYGG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 180, 255
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 2 cut(s) 150, 367
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 39, 121, 283
CviJI RGCY 7 cut(s) 35, 59, 85, 99, 103, 199, 210
CviKI_1 RGCY 7 cut(s) 35, 59, 85, 99, 103, 199, 210
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 183, 195
DpnI GATC 2 cut(s) 188, 345
DpnII GATC 2 cut(s) 186, 343
Eam1104I CTCTTC 2 cut(s) 48, 276
EarI CTCTTC 2 cut(s) 48, 276
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 108
Eco47III AGCGCT 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 3 cut(s) 15, 81, 369
EcoICRI GAGCTC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 3 cut(s) 42, 124, 286
FaiI YATR 5 cut(s) 40, 122, 168, 207, 284
FatI CATG 3 cut(s) 38, 120, 282
FauI CCCGC 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 201
FspI TGCGCA 1 cut(s) 366
GlaI GCGC 2 cut(s) 149, 366
HaeII RGCGCY 1 cut(s) 151
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 150, 367
Hin1II CATG 3 cut(s) 42, 124, 286
Hin6I GCGC 2 cut(s) 148, 365
HinP1I GCGC 2 cut(s) 148, 365
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 242, 344
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 124, 359
HpyF3I CTNAG 2 cut(s) 183, 195
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 3 cut(s) 42, 124, 286
HspAI GCGC 2 cut(s) 148, 365
Kzo9I GATC 2 cut(s) 186, 343
LmnI GCTCC 3 cut(s) 40, 155, 204
LpnPI CCDG 8 cut(s) 90, 113, 117, 207, 227, 291, 360, 374
LweI GCATC 1 cut(s) 258
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 91, 218
MalI GATC 2 cut(s) 188, 345
MboI GATC 2 cut(s) 186, 343
MboII GAAGA 9 cut(s) 19, 21, 62, 65, 74, 182, 263, 307, 404
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 2 cut(s) 68, 335
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 3 cut(s) 36, 49, 279
MroXI GAANNNNTTC 2 cut(s) 314, 399
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 38
NdeII GATC 2 cut(s) 186, 343
NlaIII CATG 3 cut(s) 42, 124, 286
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 91
NsbI TGCGCA 1 cut(s) 366
OliI CACNNNNGTG 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PdmI GAANNNNTTC 2 cut(s) 314, 399
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 108
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 2 cut(s) 186, 343
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 201
SetI ASST 8 cut(s) 37, 87, 129, 201, 212, 271, 280, 355
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 68, 335
SsiI CCGC 2 cut(s) 202, 301
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 5, 189, 252
TasI AATT 2 cut(s) 68, 335
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 187, 262
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 81, 183
TspRI CASTG 2 cut(s) 187, 262
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 68
XmnI GAANNNNTTC 2 cut(s) 314, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.