Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Reverse (-)

22479378 .. 22480537

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG166000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGTGGCCATGCCTTTTCACGACGGCAACATCCACGACTTGATTGAGATTCGATACCTTGACGTTCGCCAATTTAACAGAATAGTAGATGTCCATGGTGTTCGGAATATGAAAGATCCTCGAGGTATAGAGACAATTCGGTCTGGTGGCTCACTCAAGGAGAAAGAAGTGTGGTATGAAACTCGTGCTTTCCTAATTGTGCTACACATAAATAATTTTGACGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

75

Amino Acids

8.81

Weight (kDa)

6.39

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AbsI	CCTCGAGG	1 cut(s)	120
AccII	CGCG	1 cut(s)	224
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	6
AflIII	ACRYGT	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	8
BauI	CACGAG	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	224
BspPI	GGATC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	115
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	30
CviAII	CATG	2 cut(s)	10, 95
CviJI	RGCY	2 cut(s)	8, 150
CviKI_1	RGCY	2 cut(s)	8, 150
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	13, 98
FaiI	YATR	6 cut(s)	11, 96, 110, 128, 177, 209
FatI	CATG	2 cut(s)	9, 94
FokI	GGATG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	13, 98
HinfI	GANTC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	13, 98
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	63
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MflI	RGATCY	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	4 cut(s)	71, 135, 195, 214
MluI	ACGCGT	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	2 cut(s)	116, 129
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	8
MvnI	CGCG	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	13, 98
PaeR7I	CTCGAG	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	49
PspXI	VCTCGAGB	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	115
SetI	ASST	3 cut(s)	60, 66, 127
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	120, 155
SmoI	CTYRAG	2 cut(s)	120, 155
Sse9I	AATT	4 cut(s)	71, 135, 195, 214
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	52, 121
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	4 cut(s)	71, 135, 195, 214
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	125, 192
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.