Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Forward (+)

10027446 .. 10028960

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCATGTCCCTCGCAAGCGCGCTCAGGACTATGACCACGACGACTCTCTTACTGAGATCGACCCTGAGCTCCGCTACAGCTTCCACTATAACTATCAGCTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAGGCTGGCATTAGTGAAAGCAGGGAGGGAGGAAAGAGGGAAGTACATGGCTAGAGCTGCTGTAAAACAGAAGAAGAGTTCTACAAGCATTGTCATGGCTTTGAACTTTGCCATTTGTGAGTTACTCTATAACCCTCTTCCTGGATCCTACTACGGCTATGCACCCATTAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUC130_3NT SDA1

Protein Analysis

102

Amino Acids

11.98

Weight (kDa)

9.49

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	270, 283
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	4 cut(s)	70, 81, 100, 188
AluI	AGCT	4 cut(s)	70, 81, 100, 188
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	270, 283
ApeKI	GCWGC	1 cut(s)	188
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	21, 23
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	273
Bpu10I	CCTNAGC	2 cut(s)	24, 66
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	38, 45, 57
BsePI	GCGCGC	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	57, 275
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	3 cut(s)	37, 46, 58
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	270, 283
BssECI	CCNNGG	1 cut(s)	123
BssHII	GCGCGC	1 cut(s)	19
BssMI	GATC	2 cut(s)	57, 275
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	200, 273
BstC8I	GCNNGC	3 cut(s)	17, 21, 138
BstDEI	CTNAG	3 cut(s)	24, 54, 66
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	21, 23
BstKTI	GATC	2 cut(s)	60, 278
BstMBI	GATC	2 cut(s)	57, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
Cac8I	GCNNGC	3 cut(s)	17, 21, 138
CfoI	GCGC	2 cut(s)	21, 23
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	4 cut(s)	5, 104, 178, 226
CviJI	RGCY	8 cut(s)	70, 81, 100, 136, 182, 188, 230, 288
CviKI_1	RGCY	8 cut(s)	70, 81, 100, 136, 182, 188, 230, 288
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	24, 54, 66
DpnI	GATC	2 cut(s)	59, 277
DpnII	GATC	2 cut(s)	57, 275
Eam1104I	CTCTTC	2 cut(s)	200, 273
EarI	CTCTTC	2 cut(s)	200, 273
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	8, 107, 181, 229
FaiI	YATR	8 cut(s)	6, 33, 90, 105, 179, 227, 261, 291
FatI	CATG	4 cut(s)	4, 103, 177, 225
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	2 cut(s)	20, 22
GluI	GCNGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	21, 23
Hin1II	CATG	4 cut(s)	8, 107, 181, 229
Hin6I	GCGC	2 cut(s)	19, 21
HinP1I	GCGC	2 cut(s)	19, 21
HinfI	GANTC	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	4, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	3 cut(s)	24, 54, 66
Hsp92II	CATG	4 cut(s)	8, 107, 181, 229
HspAI	GCGC	2 cut(s)	19, 21
Kzo9I	GATC	2 cut(s)	57, 275
LmnI	GCTCC	2 cut(s)	75, 105
LpnPI	CCDG	6 cut(s)	11, 78, 122, 138, 258, 285
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	2 cut(s)	59, 277
MboI	GATC	2 cut(s)	57, 275
MboII	GAAGA	4 cut(s)	126, 214, 217, 260
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	21, 121, 126, 150, 154, 161, 276
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	57, 275
NlaIII	CATG	4 cut(s)	8, 107, 181, 229
NlaIV	GGNNCC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PauI	GCGCGC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	275
PteI	GCGCGC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	57, 275
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	4 cut(s)	72, 83, 102, 190
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseI	GCWGC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	300
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.