RLG00000008029

Protein SDA1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001799
Physical Location & Seq
Forward (+)
24665823 .. 24667087
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008029

Sequence Viewer

Length: 411 bp
ATGGCCCCTTCGACACCGCCGACAGCGTCTACGACGTCACCTAGTCCGAATCTCACGACTCCCTACTCGTCGCCTCCATCACCAAGGCCTCCTTCAAGCTCTACGACCTCGCCTTCCTGCCGACCTCCAACCTCCTCCGCTCCCTCTTCAGTTCTACTCTTGCTTCATAGTTCTACAAGCATCGTCATGGCTTTGAATTTTGCCATTTGTGAGTTATGCTATAACCTTCTTCCTGGATCCTACTATGGCTATGCACCCGTTAATAAGAAGGAGGCTCAAGCAATAAGCAGAAGGAACACAAGTATGCCACTTGCTGCAAAGAGGGCAAAGGTAGCTAAATCTCGAGTGGCAAAACACAAAAAGCTGCAGCTTTCTGGCAAAATTTTCCGAGGGAAGAAAGCATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUC130_3NT SDA1

Protein Analysis

137

Amino Acids

14.49

Weight (kDa)

10.5

Isoelectric Point (pI)

77.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 29
AciI CCGC 2 cut(s) 17, 138
AclWI GGATC 2 cut(s) 231, 244
AcsI RAATTY 2 cut(s) 196, 381
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 35
AgsI TTSAA 2 cut(s) 96, 196
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 4 cut(s) 99, 335, 364, 370
AluI AGCT 4 cut(s) 99, 335, 364, 370
AlwI GGATC 2 cut(s) 231, 244
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 2 cut(s) 3, 86
ApeKI GCWGC 3 cut(s) 314, 364, 367
ApoI RAATTY 2 cut(s) 196, 381
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 30, 72
AvaI CYCGRG 1 cut(s) 342
BamHI GGATCC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 301, 351, 379
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 365
BisI GCNGC 3 cut(s) 315, 365, 368
BlsI GCNGC 3 cut(s) 316, 366, 369
Bme1390I CCNGG 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 238
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 83, 388
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 83, 388
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 301, 351, 379
BshFI GGCC 2 cut(s) 5, 88
BsiHKCI CYCGRG 1 cut(s) 342
BsnI GGCC 2 cut(s) 5, 88
BsoBI CYCGRG 1 cut(s) 342
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 2 cut(s) 17, 138
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 2 cut(s) 6, 238
BspMAI CTGCAG 1 cut(s) 369
BspPI GGATC 2 cut(s) 231, 244
BsrBI CCGCTC 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 83, 388
BssMI GATC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 35
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 323, 332
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 301, 351, 379
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 2 cut(s) 5, 88
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 15
CviAII CATG 2 cut(s) 187, 402
CviJI RGCY 9 cut(s) 5, 88, 99, 191, 249, 275, 335, 364, 370
CviKI_1 RGCY 9 cut(s) 5, 88, 99, 191, 249, 275, 335, 364, 370
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 2 cut(s) 190, 405
FaiI YATR 8 cut(s) 168, 188, 217, 222, 246, 252, 305, 403
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 2 cut(s) 186, 401
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 315, 365, 368
Fsp4HI GCNGC 3 cut(s) 315, 365, 368
FspBI CTAG 1 cut(s) 42
GluI GCNGC 3 cut(s) 315, 365, 368
HaeIII GGCC 2 cut(s) 5, 88
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 190, 405
HinfI GANTC 2 cut(s) 49, 58
HphI GGTGA 2 cut(s) 30, 72
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 48, 389
Hpy188III TCNNGA 2 cut(s) 55, 342
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 37, 73
HpyAV CCTTC 6 cut(s) 18, 102, 123, 236, 262, 285
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 254, 317, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 332
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 190, 405
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 4 cut(s) 130, 219, 246, 360
Lsp1109I GCAGC 3 cut(s) 301, 351, 379
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 36
MalI GATC 1 cut(s) 238
MbiI CCGCTC 1 cut(s) 140
MboI GATC 1 cut(s) 236
MboII GAAGA 3 cut(s) 138, 221, 406
MflI RGATCY 1 cut(s) 236
MluCI AATT 2 cut(s) 196, 381
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 152
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 3 cut(s) 185, 302, 406
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 323, 332
NdeII GATC 1 cut(s) 236
NlaIII CATG 2 cut(s) 190, 405
NlaIV GGNNCC 2 cut(s) 6, 238
NmuCI GTSAC 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 316, 366, 369
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 6, 238
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 369
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 25
RseI CAYNNNNRTG 3 cut(s) 185, 302, 406
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 315, 365, 368
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 234
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 365
Sfr274I CTCGAG 1 cut(s) 342
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 3 cut(s) 185, 302, 406
SmlI CTYRAG 2 cut(s) 276, 342
SmoI CTYRAG 2 cut(s) 276, 342
Sse9I AATT 2 cut(s) 196, 381
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 2 cut(s) 17, 138
SspMI CTAG 1 cut(s) 42
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 11, 343
TasI AATT 2 cut(s) 196, 381
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 3 cut(s) 314, 364, 367
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 155
Tth111I GACNNNGTC 1 cut(s) 25
XapI RAATTY 2 cut(s) 196, 381
XhoI CTCGAG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 1 cut(s) 42
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.