Rh4DG241900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001799
Physical Location & Seq
Reverse (-)
45185989 .. 45187099
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG241900.1

Sequence Viewer

Length: 270 bp
ATGAAGGTAGGGATCAAGTTGCACATTGATTATGAGGAGGAAGAATTCGGCAATGCGAAGCTGAAAGTGACATGGCAGCAGGCAGGGGAGGAATCAACCATGCATGTCCCTCGCAAGTGCGCTCAGGATTATGACCACGACGACTCTCTTACTGAGATCGACCCTGAGCTCCGCTATAGCTTCCACTGTAACTATCAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.36

Weight (kDa)

5.22

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 44
AluBI AGCT 3 cut(s) 61, 169, 180
AluI AGCT 3 cut(s) 61, 169, 180
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BfaI CTAG 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 259
BmsI GCATC 1 cut(s) 224
Bpu10I CCTNAGC 2 cut(s) 123, 165
Bse3DI GCAATG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 137, 144, 156
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 92, 214
BsmFI GGGAC 2 cut(s) 92, 214
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 12, 156
BspACI CCGC 1 cut(s) 172
BspCNI CTCAG 3 cut(s) 136, 145, 157
BspPI GGATC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 58
BssMI GATC 2 cut(s) 12, 156
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 123, 153, 165
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 15, 159
BstMBI GATC 2 cut(s) 12, 156
BstNSI RCATGY 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 122
CviAII CATG 3 cut(s) 72, 100, 104
CviJI RGCY 3 cut(s) 61, 169, 180
CviKI_1 RGCY 3 cut(s) 61, 169, 180
DdeI CTNAG 3 cut(s) 123, 153, 165
DpnI GATC 2 cut(s) 14, 158
DpnII GATC 2 cut(s) 12, 156
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 44
EcoT22I ATGCAT 2 cut(s) 105, 239
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 3 cut(s) 75, 103, 107
FaiI YATR 7 cut(s) 33, 73, 101, 105, 132, 177, 239
FaqI GGGAC 2 cut(s) 92, 214
FatI CATG 3 cut(s) 71, 99, 103
Fnu4HI GCNGC 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 268
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 122
Hin1II CATG 3 cut(s) 75, 103, 107
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 2 cut(s) 92, 143
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 22, 103, 237
HpyF3I CTNAG 3 cut(s) 123, 153, 165
Hsp92II CATG 3 cut(s) 75, 103, 107
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 12, 156
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 5 cut(s) 65, 69, 110, 177, 182
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 67, 188
MalI GATC 2 cut(s) 14, 158
MboI GATC 2 cut(s) 12, 156
MboII GAAGA 2 cut(s) 53, 247
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 44
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 4 cut(s) 28, 31, 82, 120
Mph1103I ATGCAT 2 cut(s) 105, 239
MseI TTAA 1 cut(s) 215
NdeII GATC 2 cut(s) 12, 156
NlaIII CATG 3 cut(s) 75, 103, 107
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 2 cut(s) 105, 239
NspI RCATGY 1 cut(s) 107
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 171
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 12, 156
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 171
SetI ASST 4 cut(s) 9, 63, 171, 182
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 44
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 268
SstI GAGCTC 1 cut(s) 171
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 44
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 191
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 191
XapI RAATTY 1 cut(s) 44
XceI RCATGY 1 cut(s) 107
XspI CTAG 1 cut(s) 268
Zsp2I ATGCAT 2 cut(s) 105, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.