Rh5CG247400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001799
Physical Location & Seq
Forward (+)
26055266 .. 26058140
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG247400.1

Sequence Viewer

Length: 249 bp
ATGATTTTTAAAGAGGAGGATGAATTCGGCAATGCGAAGCTGAAAGTAACACGGCAGCAGGCAGGGGAGGAATCAACCATGCATGTCCCTCACAAGCGCGCTCAGGACTATGACCACAACGACTCTCTTACTGAGATCGACCCTGAGCTCCGCTACAGCTTCCACTGTAACTATCAGGGGATGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.6

Weight (kDa)

5.73

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 23
AluBI AGCT 3 cut(s) 40, 148, 159
AluI AGCT 3 cut(s) 40, 148, 159
Alw21I GWGCWC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 23
AspLEI GCGC 2 cut(s) 99, 101
AvaI CYCGRG 1 cut(s) 238
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 68
BfaI CTAG 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 238
BmsI GCATC 1 cut(s) 203
Bpu10I CCTNAGC 2 cut(s) 102, 144
Bse3DI GCAATG 1 cut(s) 37
BseGI GGATG 2 cut(s) 25, 186
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 3 cut(s) 116, 123, 135
BsePI GCGCGC 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 3 cut(s) 115, 124, 136
BspFNI CGCG 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 37
BssHII GCGCGC 1 cut(s) 97
BssMI GATC 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 60, 99
BstDEI CTNAG 3 cut(s) 102, 132, 144
BstF5I GGATG 2 cut(s) 25, 186
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 2 cut(s) 99, 101
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 25, 186
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 60, 99
CfoI GCGC 2 cut(s) 99, 101
CviAII CATG 2 cut(s) 79, 83
CviJI RGCY 3 cut(s) 40, 148, 159
CviKI_1 RGCY 3 cut(s) 40, 148, 159
DdeI CTNAG 3 cut(s) 102, 132, 144
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 23
EcoT22I ATGCAT 2 cut(s) 84, 218
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 82, 86
FaiI YATR 4 cut(s) 80, 84, 111, 218
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 78, 82
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 2 cut(s) 32, 193
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 247
GlaI GCGC 2 cut(s) 98, 100
GluI GCNGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 99, 101
Hin1II CATG 2 cut(s) 82, 86
Hin6I GCGC 2 cut(s) 97, 99
HinP1I GCGC 2 cut(s) 97, 99
HinfI GANTC 2 cut(s) 71, 122
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 82, 216
HpyF3I CTNAG 3 cut(s) 102, 132, 144
Hsp92II CATG 2 cut(s) 82, 86
HspAI GCGC 2 cut(s) 97, 99
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 44, 48, 89, 156, 161
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 46, 167
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 23
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 4 cut(s) 7, 10, 61, 99
Mph1103I ATGCAT 2 cut(s) 84, 218
MseI TTAA 2 cut(s) 9, 194
MvnI CGCG 1 cut(s) 99
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 82, 86
NsiI ATGCAT 2 cut(s) 84, 218
NspI RCATGY 1 cut(s) 86
PauI GCGCGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 150
PteI GCGCGC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 9, 194
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 150
SetI ASST 3 cut(s) 42, 150, 161
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 247
SstI GAGCTC 1 cut(s) 150
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 9, 194
Tru9I TTAA 2 cut(s) 9, 194
TscAI CASTG 1 cut(s) 170
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 170
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 247
Zsp2I ATGCAT 2 cut(s) 84, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.