Rh7BG241400

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001799
Physical Location & Seq
Forward (+)
21297346 .. 21299124
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG241400.1

Sequence Viewer

Length: 363 bp
ATGGCTTCGCGTCGGCTCTTATCCCCTCTTCTCCGATCCCCTTCCAGATTTTCGATCTCAAACCATAACCCTACCCTATCAACCCCCTCGCAATCGCCTCCCCGCACTTCGCCGTACGCCCACCTCCTCCGGAATGCTCTTCTTACCGGCCGCCGCATGCTCCACACCTCTTCTTCTATCACCCTCCATGTAAAAAGAAGAATGAACAAGGAGGAGAGGCTGGCATTAGTGAAAGCAGGGAGGGAGGAAAGAGTGAAGTACATGGCTAGAGCTGCTGTAAAACAGAAGAAGGAGGGAGGCTCGAGCAATAAGCAGAAGCAACAAAAGTATGCCACTTGCTGCAAAAAGGGCAAAGGCAGCTAA

Protein Analysis

120

Amino Acids

13.5

Weight (kDa)

11.52

Isoelectric Point (pI)

91.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synthase_beta PF11421 1 - 43 2.7e-08 ATP synthase F1 beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 129
AciI CCGC 3 cut(s) 103, 151, 154
AclWI GGATC 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 2 cut(s) 116, 260
AluBI AGCT 2 cut(s) 272, 360
AluI AGCT 2 cut(s) 272, 360
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 272, 339, 357
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 301
BbvI GCAGC 2 cut(s) 259, 326
BceAI ACGGC 1 cut(s) 97
BfaI CTAG 1 cut(s) 267
BisI GCNGC 5 cut(s) 151, 154, 273, 340, 358
BlsI GCNGC 5 cut(s) 152, 155, 274, 341, 359
BmeT110I CYCGRG 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BsaWI WCCGGW 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 146
BseAI TCCGGA 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 116, 227
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 2 cut(s) 259, 326
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 2 cut(s) 130, 147
BsiWI CGTACG 1 cut(s) 114
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 301
Bsp13I TCCGGA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 35, 54
BspACI CCGC 3 cut(s) 103, 151, 154
BspANI GGCC 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 1 cut(s) 10
BspPI GGATC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 2 cut(s) 35, 54
Bst6I CTCTTC 3 cut(s) 33, 144, 175
BstC8I GCNNGC 2 cut(s) 158, 222
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 2 cut(s) 38, 57
BstMBI GATC 2 cut(s) 35, 54
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 3 cut(s) 272, 348, 357
BstNSI RCATGY 1 cut(s) 160
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 259, 326
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 158, 222
Cfr10I RCCGGY 1 cut(s) 146
Csp6I GTAC 2 cut(s) 115, 259
CviAII CATG 3 cut(s) 157, 188, 262
CviJI RGCY 8 cut(s) 5, 16, 150, 220, 266, 272, 300, 360
CviKI_1 RGCY 8 cut(s) 5, 16, 150, 220, 266, 272, 300, 360
CviQI GTAC 2 cut(s) 115, 259
DpnI GATC 2 cut(s) 37, 56
DpnII GATC 2 cut(s) 35, 54
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 3 cut(s) 33, 144, 175
EarI CTCTTC 3 cut(s) 33, 144, 175
EclXI CGGCCG 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 301
FaeI CATG 3 cut(s) 160, 191, 265
FaiI YATR 5 cut(s) 66, 158, 189, 263, 330
FatI CATG 3 cut(s) 156, 187, 261
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 5 cut(s) 151, 154, 273, 340, 358
Fsp4HI GCNGC 5 cut(s) 151, 154, 273, 340, 358
FspBI CTAG 1 cut(s) 267
GluI GCNGC 5 cut(s) 151, 154, 273, 340, 358
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 130, 147
Hin1II CATG 3 cut(s) 160, 191, 265
HpaII CCGG 2 cut(s) 130, 147
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 45, 130
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 51, 283
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 348, 357
Hsp92II CATG 3 cut(s) 160, 191, 265
Kpn2I TCCGGA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 35, 54
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 5 cut(s) 58, 143, 160, 206, 222
Lsp1109I GCAGC 2 cut(s) 259, 326
MaeI CTAG 1 cut(s) 267
MalI GATC 2 cut(s) 37, 56
MboI GATC 2 cut(s) 35, 54
MboII GAAGA 6 cut(s) 20, 131, 162, 165, 210, 298
MroI TCCGGA 1 cut(s) 129
MspI CCGG 2 cut(s) 130, 147
Mva1269I GAATGC 1 cut(s) 139
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 272, 348, 357
NdeII GATC 2 cut(s) 35, 54
NlaIII CATG 3 cut(s) 160, 191, 265
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 144
PctI GAATGC 1 cut(s) 139
Pfl23II CGTACG 1 cut(s) 114
PkrI GCNGC 5 cut(s) 152, 155, 274, 341, 359
PspLI CGTACG 1 cut(s) 114
PspXI VCTCGAGB 1 cut(s) 301
RsaI GTAC 2 cut(s) 116, 260
RsaNI GTAC 2 cut(s) 115, 259
SapI GCTCTTC 1 cut(s) 144
SatI GCNGC 5 cut(s) 151, 154, 273, 340, 358
Sau3AI GATC 2 cut(s) 35, 54
SetI ASST 4 cut(s) 126, 170, 274, 362
Sfr274I CTCGAG 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SphI GCATGC 1 cut(s) 160
SsiI CCGC 3 cut(s) 103, 151, 154
SspMI CTAG 1 cut(s) 267
TaqI TCGA 2 cut(s) 53, 302
TatI WGTACW 1 cut(s) 258
TauI GCSGC 2 cut(s) 153, 156
TseI GCWGC 3 cut(s) 272, 339, 357
TspDTI ATGAA 1 cut(s) 218
XceI RCATGY 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.