Rh5DG495500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001799
Physical Location & Seq
Forward (+)
77728144 .. 77728483
340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG495500.1

Sequence Viewer

Length: 255 bp
ATGCATGTCCCTCGCAAGCGCGCTCAGGACTATGACCACGACGACTCTCTTACTGAGATCGACCCTGAGCTCCGCTACAGCTTCCACTGTAACTATCAGAATACAAGAGTTGTAGTTGTAGAGGACAAAATGAAAATTCTCTCAGAGAGTTGTAATCAAATTTCACATGTTTGGTCCTTGGGTGGAACTTCCACCAAATTGGAAGGGTTAATTTCAGACCACAAGGCTGCTGGTGGATTATGCATAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.53

Weight (kDa)

6.16

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 73
AcsI RAATTY 2 cut(s) 135, 159
AflIII ACRYGT 1 cut(s) 166
AluBI AGCT 2 cut(s) 70, 81
AluI AGCT 2 cut(s) 70, 81
Alw21I GWGCWC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 135, 159
AspLEI GCGC 2 cut(s) 21, 23
AspS9I GGNCC 1 cut(s) 174
AvaII GGWCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 214
BcgI CGANNNNNNTGC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
Bpu10I CCTNAGC 2 cut(s) 24, 66
BsaJI CCNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 38, 45, 57, 156
BsePI GCGCGC 1 cut(s) 19
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 4 cut(s) 37, 46, 58, 155
BspFNI CGCG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 177
BssHII GCGCGC 1 cut(s) 19
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 17, 21
BstDEI CTNAG 4 cut(s) 24, 54, 66, 142
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 21, 23
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 8, 170
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 17, 21
CfoI GCGC 2 cut(s) 21, 23
Cfr13I GGNCC 1 cut(s) 174
CviAII CATG 2 cut(s) 5, 167
CviJI RGCY 3 cut(s) 70, 81, 227
CviKI_1 RGCY 3 cut(s) 70, 81, 227
DdeI CTNAG 4 cut(s) 24, 54, 66, 142
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 2 cut(s) 6, 245
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 8, 170
FaiI YATR 5 cut(s) 6, 33, 168, 241, 245
FatI CATG 2 cut(s) 4, 166
Fnu4HI GCNGC 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 228
GlaI GCGC 2 cut(s) 20, 22
GluI GCNGC 1 cut(s) 228
HhaI GCGC 2 cut(s) 21, 23
Hin1II CATG 2 cut(s) 8, 170
Hin6I GCGC 2 cut(s) 19, 21
HinP1I GCGC 2 cut(s) 19, 21
HinfI GANTC 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 99, 145, 217
Hpy188III TCNNGA 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 4, 243
HpyF3I CTNAG 4 cut(s) 24, 54, 66, 142
Hsp92II CATG 2 cut(s) 8, 170
HspAI GCGC 2 cut(s) 19, 21
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 11, 78, 216
Lsp1109I GCAGC 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 4 cut(s) 135, 159, 197, 210
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 2 cut(s) 21, 115
Mph1103I ATGCAT 2 cut(s) 6, 245
MseI TTAA 1 cut(s) 209
MvnI CGCG 1 cut(s) 21
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 8, 170
NsiI ATGCAT 2 cut(s) 6, 245
NspI RCATGY 2 cut(s) 8, 170
PauI GCGCGC 1 cut(s) 19
PciI ACATGT 1 cut(s) 166
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PscI ACATGT 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 174
PteI GCGCGC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 72
SetI ASST 2 cut(s) 72, 83
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 174
Sse9I AATT 4 cut(s) 135, 159, 197, 210
SsiI CCGC 1 cut(s) 73
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 60
TasI AATT 4 cut(s) 135, 159, 197, 210
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 92
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 2 cut(s) 135, 159
XceI RCATGY 2 cut(s) 8, 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
Zsp2I ATGCAT 2 cut(s) 6, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.