Rh5DG265500

Belongs to the membrane-bound acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001799
Physical Location & Seq
Reverse (-)
32045630 .. 32080168
34539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG265500.1

Sequence Viewer

Length: 618 bp
ATGCAGATGAGGGAGAGAGGTGTCCAGAGCGACAAGTTTGCCTTTATTACATCCCTTTCTTATCTGGCATATGCACCTCTTTATCTTGCTGGGCCAATTCTAAGCTTCAATGCCTTTGCTTCACAGCTGGATATTCCTCAAAATAACTATTCAGTTAGAGACACTACTTGGTACGGTTTGCATTGGGTATTCAGTCTCCTTCTGATGGCACTAATGACACATCTCTTTTACTACAATGCCTTTGCAATCAGCATTGAAGGCTTCAAGCTCGAGCAGAATAGGAGCATTGGAGCAAACGGTTCCGGTCCTCCCATTCGCTCTCAAAATGCCTTCAATTTTGTGATTCGCTCACTTGAAGAGTACCGATTTGCTAAGCAAGAGGATGAAGAGGTGCTGGTGCTGCATACGGATTTGGTCGAAGTCCTCAGCCGATGGAAGCTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAGGCTGGCATTAGTGAAAGCAGGGAGGGAGGAAAGAGGGAAGTACATGGCTAGAGCTGCTGTAAAACAGAAGAAGGAGGGAGGCTCGAGCAATAAGCAGAAGCAACAAAAGTATGCCACTTGCTGCAAAAAGGGCAAAGGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT

Protein Analysis

205

Amino Acids

23.53

Weight (kDa)

9.72

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT PF03062 8 - 85 9.1e-06 MBOAT, membrane-bound O-acyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 173, 362, 515
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 5 cut(s) 109, 257, 265, 334, 356
AluBI AGCT 6 cut(s) 105, 127, 268, 439, 527, 615
AluI AGCT 6 cut(s) 105, 127, 268, 439, 527, 615
Alw26I GTCTC 2 cut(s) 153, 200
Ama87I CYCGRG 2 cut(s) 269, 556
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 4 cut(s) 400, 527, 594, 612
AspS9I GGNCC 2 cut(s) 92, 305
AvaI CYCGRG 2 cut(s) 269, 556
AvaII GGWCC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 3 cut(s) 387, 514, 581
BccI CCATC 2 cut(s) 199, 426
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BcoDI GTCTC 2 cut(s) 153, 200
BfaI CTAG 1 cut(s) 522
BisI GCNGC 4 cut(s) 401, 528, 595, 613
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 4 cut(s) 402, 529, 596, 614
Bme18I GGWCC 1 cut(s) 305
BmeT110I CYCGRG 2 cut(s) 269, 556
BmgT120I GGNCC 2 cut(s) 92, 305
BmiI GGNNCC 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 539, 571
Bpu10I CCTNAGC 1 cut(s) 425
Bpu1102I GCTNAGC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 50, 388
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 3 cut(s) 387, 514, 581
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 94
BsiHKCI CYCGRG 2 cut(s) 269, 556
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 153, 200
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 2 cut(s) 269, 556
Bsp1720I GCTNAGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 176, 299
Bst6I CTCTTC 2 cut(s) 351, 381
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 101, 372, 425
BstF5I GGATG 2 cut(s) 50, 388
BstMAI GTCTC 2 cut(s) 153, 200
BstMWI GCNNNNNNNGC 5 cut(s) 258, 400, 527, 603, 612
BstV1I GCAGC 3 cut(s) 387, 514, 581
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 50, 388
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 92, 305
Csp6I GTAC 3 cut(s) 172, 361, 514
CviAII CATG 2 cut(s) 443, 517
CviQI GTAC 3 cut(s) 172, 361, 514
DdeI CTNAG 3 cut(s) 101, 372, 425
Eam1104I CTCTTC 2 cut(s) 351, 381
EarI CTCTTC 2 cut(s) 351, 381
Eco130I CCWWGG 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 305
Eco88I CYCGRG 2 cut(s) 269, 556
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 446, 520
FaiI YATR 6 cut(s) 70, 72, 405, 444, 518, 585
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 2 cut(s) 442, 516
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 401, 528, 595, 613
FokI GGATG 2 cut(s) 37, 395
Fsp4HI GCNGC 4 cut(s) 401, 528, 595, 613
FspBI CTAG 1 cut(s) 522
GluI GCNGC 4 cut(s) 401, 528, 595, 613
GsaI CCCAGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 303
Hin1II CATG 2 cut(s) 446, 520
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 303
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 25
HpyAV CCTTC 4 cut(s) 209, 251, 340, 538
HpyCH4III ACNGT 2 cut(s) 176, 299
HpyCH4V TGCA 6 cut(s) 4, 74, 181, 245, 403, 597
HpyF10VI GCNNNNNNNGC 5 cut(s) 258, 400, 527, 603, 612
HpyF3I CTNAG 3 cut(s) 101, 372, 425
Hsp92II CATG 2 cut(s) 446, 520
LmnI GCTCC 3 cut(s) 282, 290, 444
LpnPI CCDG 8 cut(s) 38, 50, 75, 113, 316, 380, 461, 477
Lsp1109I GCAGC 3 cut(s) 387, 514, 581
MaeI CTAG 1 cut(s) 522
MboII GAAGA 4 cut(s) 368, 398, 465, 553
MluCI AATT 2 cut(s) 96, 334
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 258, 400, 527, 603, 612
NdeI CATATG 1 cut(s) 70
NlaIII CATG 2 cut(s) 446, 520
NlaIV GGNNCC 1 cut(s) 301
PaeR7I CTCGAG 2 cut(s) 269, 556
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 402, 529, 596, 614
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 92, 305
PspXI VCTCGAGB 2 cut(s) 269, 556
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 3 cut(s) 173, 362, 515
RsaNI GTAC 3 cut(s) 172, 361, 514
SatI GCNGC 4 cut(s) 401, 528, 595, 613
Sau96I GGNCC 2 cut(s) 92, 305
SetI ASST 9 cut(s) 22, 79, 107, 129, 270, 393, 441, 529, 617
Sfr274I CTCGAG 2 cut(s) 269, 556
SinI GGWCC 1 cut(s) 305
SlaI CTCGAG 2 cut(s) 269, 556
SmlI CTYRAG 2 cut(s) 269, 556
SmoI CTYRAG 2 cut(s) 269, 556
Sse9I AATT 2 cut(s) 96, 334
SspMI CTAG 1 cut(s) 522
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 176, 299
TaqI TCGA 3 cut(s) 270, 417, 557
TasI AATT 2 cut(s) 96, 334
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 1 cut(s) 343
TseI GCWGC 4 cut(s) 400, 527, 594, 612
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 305
XhoI CTCGAG 2 cut(s) 269, 556
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.