Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015060.1

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Forward (+)

106868 .. 107185

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015060.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtcgaaggcgaagaaggagctgatggcgtcagcgccgtggagggtacaagaagagaaggaagaattcagcgacgcgaagctgaaagtgacacggcagcaggcgggggcggaatcaaccatgcacgttcctcgcaagaaaaccaagcgcgctcaggactatcaagacgacgacgactctctcactgagatcgaccctgagctccgctacagcttccaccgtaactatcaggtacttcctcctttcaacttttacccctcagtttctccggaatcaccgattcaatgttatctaggctttgtctgttttgctcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.26

Weight (kDa)

6.73

Isoelectric Point (pI)

69.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	77, 150
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	3 cut(s)	104, 110, 205
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	48, 234
AgsI	TTSAA	2 cut(s)	247, 284
AluBI	AGCT	4 cut(s)	22, 82, 202, 213
AluI	AGCT	4 cut(s)	22, 82, 202, 213
Alw21I	GWGCWC	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	3 cut(s)	37, 150, 152
AsuHPI	GGTGA	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	22, 110
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	208
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bpu10I	CCTNAGC	2 cut(s)	153, 198
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	268
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	38
BseMII	CTCAG	4 cut(s)	167, 177, 189, 273
BsePI	GCGCGC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	2 cut(s)	77, 150
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	3 cut(s)	104, 110, 205
BspCNI	CTCAG	4 cut(s)	166, 178, 190, 272
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	77, 150
BssECI	CCNNGG	1 cut(s)	38
BssHII	GCGCGC	1 cut(s)	148
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	102, 150
BstDEI	CTNAG	4 cut(s)	153, 186, 198, 259
BstDSI	CCRYGG	1 cut(s)	38
BstFNI	CGCG	2 cut(s)	77, 150
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	3 cut(s)	37, 150, 152
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	2 cut(s)	77, 150
BstV1I	GCAGC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	102, 150
CfoI	GCGC	3 cut(s)	37, 150, 152
CseI	GACGC	2 cut(s)	18, 83
Csp6I	GTAC	2 cut(s)	47, 233
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	5 cut(s)	22, 82, 202, 213, 297
CviKI_1	RGCY	5 cut(s)	22, 82, 202, 213, 297
CviQI	GTAC	2 cut(s)	47, 233
DdeI	CTNAG	4 cut(s)	153, 186, 198, 259
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	1 cut(s)	124
FaiI	YATR	1 cut(s)	122
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	3 cut(s)	36, 149, 151
GluI	GCNGC	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	38
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	2 cut(s)	18, 83
HhaI	GCGC	3 cut(s)	37, 150, 152
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	3 cut(s)	35, 148, 150
HinP1I	GCGC	3 cut(s)	35, 148, 150
HinfI	GANTC	4 cut(s)	113, 176, 272, 280
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	267
Hpy188III	TCNNGA	3 cut(s)	155, 164, 269
Hpy99I	CGWCG	3 cut(s)	77, 173, 176
HpyAV	CCTTC	2 cut(s)	10, 52
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	124
HpyF3I	CTNAG	4 cut(s)	153, 186, 198, 259
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	3 cut(s)	35, 148, 150
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	19, 207
LpnPI	CCDG	5 cut(s)	86, 140, 210, 215, 282
Lsp1109I	GCAGC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	88, 221
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	3 cut(s)	25, 65, 74
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	36, 141, 249, 268
MroI	TCCGGA	1 cut(s)	268
MspI	CCGG	1 cut(s)	269
MvnI	CGCG	2 cut(s)	77, 150
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	88
PauI	GCGCGC	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	113, 272, 280
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	204
PteI	GCGCGC	1 cut(s)	148
RsaI	GTAC	2 cut(s)	48, 234
RsaNI	GTAC	2 cut(s)	47, 233
SacI	GAGCTC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	6 cut(s)	24, 84, 129, 204, 215, 234
SfcI	CTRYAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	3 cut(s)	104, 110, 205
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	5, 192
TasI	AATT	1 cut(s)	65
TfiI	GAWTC	3 cut(s)	113, 272, 280
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	88
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	65
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.