Rh4AG075700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001799
Physical Location & Seq
Forward (+)
15435916 .. 15439183
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG075700.1

Sequence Viewer

Length: 540 bp
ATGCCGGTACTGGTAGAGAAAGGTGCCGATGTCGCTGAAAAGTGGGTGCCCTCTGTTGTTCGGGTGTCCAGATCAATTTGGAAGTCCAATTCAGCATTGGTGTCCAACCAATTATGGGTGTCTAAAGCATTTTGGGAGATTGATGAGATTGGCTCAACTAATCACCATTTTCGTTATGTTTTAGGATTTGATACCTCGACGTTCGCCAAGATGTTGATCACAGCTTGCAGATGCACTCATCATTGGTACAACGACTTTCTCACAGAGTTGGAGGTTTGCTTCAACTTCACAGCTTCTTATTTGCTAAATGATAATGGAAATTCGGAAATTCTCTTGTTTAACAGAATAGAGAAAGAAGTGTGGCAACTGTCAAGGAGGAAAGATGTGATGCACAGTGCGCTAAAAAGGATACTAGTTGGTTTAAAACAACATATCATCGAGTCAAATCTATGTTTTGTAGCTGTGTTGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.6

Weight (kDa)

8.63

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 46
AcsI RAATTY 2 cut(s) 319, 327
AfaI GTAC 2 cut(s) 9, 248
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 283
AhlI ACTAGT 1 cut(s) 412
AluBI AGCT 3 cut(s) 224, 293, 461
AluI AGCT 3 cut(s) 224, 293, 461
Ama87I CYCGRG 1 cut(s) 529
ApoI RAATTY 2 cut(s) 319, 327
AspLEI GCGC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 529
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 2 cut(s) 23, 46
BciVI GTATCC 1 cut(s) 402
BclI TGATCA 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 412
BfaI CTAG 2 cut(s) 413, 538
BfuI GTATCC 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 25, 48
BmsI GCATC 3 cut(s) 221, 378, 494
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BsaBI GATNNNNATC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 215
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 51
BshNI GGYRCC 2 cut(s) 23, 46
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 71, 216
BspLI GGNNCC 2 cut(s) 25, 48
BspT107I GGYRCC 2 cut(s) 23, 46
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 2 cut(s) 71, 216
Bst4CI ACNGT 2 cut(s) 369, 395
Bst6I CTCTTC 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 226
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 2 cut(s) 74, 219
BstMBI GATC 2 cut(s) 71, 216
BstMWI GCNNNNNNNGC 2 cut(s) 32, 397
BstSLI GKGCMC 1 cut(s) 51
BsuI GTATCC 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 4
Csp6I GTAC 2 cut(s) 8, 247
CviJI RGCY 4 cut(s) 153, 224, 293, 461
CviKI_1 RGCY 4 cut(s) 153, 224, 293, 461
CviQI GTAC 2 cut(s) 8, 247
DpnI GATC 2 cut(s) 73, 218
DpnII GATC 2 cut(s) 71, 216
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 509
FaiI YATR 5 cut(s) 115, 177, 432, 451, 509
FaqI GGGAC 1 cut(s) 484
FbaI TGATCA 1 cut(s) 216
FspBI CTAG 2 cut(s) 413, 538
GlaI GCGC 1 cut(s) 399
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 400
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 1 cut(s) 440
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 369, 395
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 4 cut(s) 228, 234, 391, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 397
HpySE526I ACGT 1 cut(s) 200
HspAI GCGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 2 cut(s) 71, 216
LpnPI CCDG 2 cut(s) 18, 82
LweI GCATC 3 cut(s) 221, 378, 494
MaeI CTAG 2 cut(s) 413, 538
MaeII ACGT 1 cut(s) 200
MalI GATC 2 cut(s) 73, 218
MboI GATC 2 cut(s) 71, 216
MboII GAAGA 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 5 cut(s) 75, 88, 110, 319, 327
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 2 cut(s) 129, 249
MnlI CCTC 4 cut(s) 61, 205, 265, 369
Mph1103I ATGCAT 1 cut(s) 509
MseI TTAA 3 cut(s) 339, 422, 485
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 32, 397
NdeII GATC 2 cut(s) 71, 216
NlaIV GGNNCC 2 cut(s) 25, 48
NsiI ATGCAT 1 cut(s) 509
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 25, 48
RsaI GTAC 2 cut(s) 9, 248
RsaNI GTAC 2 cut(s) 8, 247
SaqAI TTAA 3 cut(s) 339, 422, 485
Sau3AI GATC 2 cut(s) 71, 216
SchI GAGTC 1 cut(s) 449
SduI GDGCHC 1 cut(s) 51
SetI ASST 7 cut(s) 25, 197, 203, 226, 276, 295, 463
SfaNI GCATC 3 cut(s) 221, 378, 494
SpeI ACTAGT 1 cut(s) 412
Sse9I AATT 5 cut(s) 75, 88, 110, 319, 327
SspMI CTAG 2 cut(s) 413, 538
TaaI ACNGT 2 cut(s) 369, 395
TaiI ACGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 197, 438
TasI AATT 5 cut(s) 75, 88, 110, 319, 327
Tru1I TTAA 3 cut(s) 339, 422, 485
Tru9I TTAA 3 cut(s) 339, 422, 485
TscAI CASTG 1 cut(s) 400
TspRI CASTG 1 cut(s) 400
XapI RAATTY 2 cut(s) 319, 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 2 cut(s) 413, 538
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.