Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001799

Physical Location & Seq

Genomic Coordinates Reverse (-)

11405517 .. 11408062

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCGTGAGCCTAGATCCACCATTATCATCCCGGTGCACAAGTTCGAGATCCTCTCTTGCGATTCGAACAAGTACGACGACTGCGTCATCGCCACCGTCTTCGTCGACAAATCGATCAAGAGTACCGATTTGCTAAGCAAGAGGATGAAGAGGTGCTGGTGCTGCATACGGATTTGGTCGAAGTCCTCAGCTGATGGAAGCTCCATAGCTGCTGTAAAACAGAAGAAGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTTTAGTTTGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

106

Amino Acids

12.04

Weight (kDa)

8.87

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	73 - 105	9.9e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33810
fragaria_vesca	FvH4_5g25840
malus_domestica	MD08G1215600.v1.1 MD15G1400100.v1.1
prunus_persica	Prupe.1G547300_v2.0.a1
pyrus_communis	pycom08g18670 pycom15g35870
rosa_chinensis	RchiOBHm_Chr3g0466881 RchiOBHm_Chr6g0267291 RchiOBHm_Chr7g0216321
rosa_laevigata	RLG00000002582 RLG00000008029 RLG00000021151
rosa_multiflora	Rmu_sc0006888.1_g000018 Rmu_sc0015060.1_g000020 Rmu_sc0043009.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243330 Rroxscaffold_4G00297970
rosa_rugosa	Rorug02G0255100 Rorug07G0050100 Rorug07G0159900
rosa_samantha	Rh1AG146800 Rh1CG035900 Rh1CG138200 Rh1DG153500 Rh2AG466000 Rh2CG452600 Rh3AG132000 Rh3BG153100 Rh3BG373000 Rh4AG075700 Rh4AG132100 Rh4BG263700 Rh4DG126200 Rh4DG241900 Rh5BG107400 Rh5BG107500 Rh5CG247400 Rh5DG265500 Rh5DG495500 Rh6CG166000 Rh7BG241400 Rh7BG289600 Rh7DG263500 Rh7DG299700
rosa_wichuraiana	Rw6G014070 Rw7G025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	105
AclWI	GGATC	2 cut(s)	9, 43
AfaI	GTAC	2 cut(s)	74, 124
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	3 cut(s)	191, 201, 209
AluI	AGCT	3 cut(s)	191, 201, 209
Alw21I	GWGCWC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	9, 43
ApaLI	GTGCAC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	162, 209
AsuC2I	CCSGG	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	149, 196
BccI	CCATC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	163, 210
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	2 cut(s)	164, 211
Bme1390I	CCNGG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	113
BseGI	GGATG	2 cut(s)	27, 150
BseMII	CTCAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	149, 196
BshVI	ATCGAT	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	14, 48, 114
Bsp1720I	GCTNAGC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	200
BspDI	ATCGAT	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	9, 43
BspT104I	TTCGAA	1 cut(s)	65
BssMI	GATC	3 cut(s)	14, 48, 114
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	134, 187
BstF5I	GGATG	2 cut(s)	27, 150
BstKTI	GATC	3 cut(s)	17, 51, 117
BstMBI	GATC	3 cut(s)	14, 48, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	149, 196
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	14, 48
BstYI	RGATCY	2 cut(s)	14, 48
Bsu15I	ATCGAT	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	27, 150
Cac8I	GCNNGC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	113
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	73, 123
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	5 cut(s)	10, 191, 201, 209, 285
CviKI_1	RGCY	5 cut(s)	10, 191, 201, 209, 285
CviQI	GTAC	2 cut(s)	73, 123
DdeI	CTNAG	2 cut(s)	134, 187
DpnI	GATC	3 cut(s)	16, 50, 116
DpnII	GATC	3 cut(s)	14, 48, 114
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	298
FaeI	CATG	1 cut(s)	253
FaiI	YATR	4 cut(s)	167, 206, 251, 282
FatI	CATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	163, 210
FokI	GGATG	2 cut(s)	14, 157
Fsp4HI	GCNGC	2 cut(s)	163, 210
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	163, 210
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	37, 106
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	3 cut(s)	46, 118, 257
Hpy8I	GTNNAC	2 cut(s)	37, 106
Hpy99I	CGWCG	2 cut(s)	80, 107
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	37, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	134, 187
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	14, 48, 114
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	4 cut(s)	45, 142, 270, 286
Lsp1109I	GCAGC	2 cut(s)	149, 196
MaeI	CTAG	1 cut(s)	12
MalI	GATC	3 cut(s)	16, 50, 116
MboI	GATC	3 cut(s)	14, 48, 114
MboII	GAAGA	3 cut(s)	91, 160, 235
MflI	RGATCY	2 cut(s)	14, 48
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	244
MnlI	CCTC	4 cut(s)	62, 135, 144, 196
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	162
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	14, 48, 114
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	65
PciI	ACATGT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	164, 211
PscI	ACATGT	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	14, 48
PsyI	GACNNNGTC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	74, 124
RsaNI	GTAC	2 cut(s)	73, 123
RseI	CAYNNNNRTG	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	104
SatI	GCNGC	2 cut(s)	163, 210
Sau3AI	GATC	3 cut(s)	14, 48, 114
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	5 cut(s)	155, 193, 203, 211, 231
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	5 cut(s)	45, 65, 105, 113, 179
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	162, 209
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	35
XceI	RCATGY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.