RLG00000002582

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001799
Physical Location & Seq
Forward (+)
36593135 .. 36595089
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002582

Sequence Viewer

Length: 420 bp
ATGTCGAAGGCGAAGAAGGAGCTGATGGCGTCAGCGCCGTGGAGGGTACAAGAAAAGGAGGAAGAATTCAGCGACGCGAAGCTGAAAGTGACACGGCAGCAGGCGGGGGCCGAATCAACCATGCACGTCCCTCGCAAGAAAACCAAGCGCGCTCAGGACTATCAAGACGACGACGACTCTCTCACTGAGATCGACCCTGAGCTCCGCTACAGCTTCCACCGTAACTATCAGTTCCTTCAACGAGTTTTTAGCATTGATACTATCGTGAAACCTCTTCCGCCTTCCATGGCATACAATGTCTCCCGCAACTTGAACTTCTTCACTCGCATTTTCACCCAGTTTTTTGATCCTGAAGGTATAGCAAATGCGCAGAAATCACTCGGTATAGGACAGGAAGAGAAAGCCCGTCGTGTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.25

Weight (kDa)

9.36

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 369
AccII CGCG 2 cut(s) 77, 150
AciI CCGC 4 cut(s) 104, 205, 278, 304
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 48
AgsI TTSAA 2 cut(s) 239, 313
AjiI CACGTC 1 cut(s) 127
AluBI AGCT 4 cut(s) 22, 82, 202, 213
AluI AGCT 4 cut(s) 22, 82, 202, 213
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 4 cut(s) 37, 150, 152, 370
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 325
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 19
BceAI ACGGC 2 cut(s) 22, 110
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 331
Bpu10I CCTNAGC 2 cut(s) 153, 198
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 38, 285
BsaWI WCCGGW 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bse1I ACTGG 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 38, 285
BseMII CTCAG 3 cut(s) 167, 177, 189
BseNI ACTGG 1 cut(s) 337
BsePI GCGCGC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 77, 150
BshFI GGCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 189, 346
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 4 cut(s) 104, 205, 278, 304
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 3 cut(s) 166, 178, 190
BspFNI CGCG 2 cut(s) 77, 150
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 341
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 38, 285
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 2 cut(s) 189, 346
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 279, 390
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 102, 150
BstDEI CTNAG 3 cut(s) 153, 186, 198
BstDSI CCRYGG 2 cut(s) 38, 285
BstFNI CGCG 2 cut(s) 77, 150
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 4 cut(s) 37, 150, 152, 370
BstKTI GATC 2 cut(s) 192, 349
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 189, 346
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 2 cut(s) 77, 150
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 2 cut(s) 38, 285
BtrI CACGTC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 102, 150
CfoI GCGC 4 cut(s) 37, 150, 152, 370
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 2 cut(s) 18, 83
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 121, 286
CviJI RGCY 6 cut(s) 22, 82, 110, 202, 213, 404
CviKI_1 RGCY 6 cut(s) 22, 82, 110, 202, 213, 404
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 3 cut(s) 153, 186, 198
DpnI GATC 2 cut(s) 191, 348
DpnII GATC 2 cut(s) 189, 346
Eam1104I CTCTTC 2 cut(s) 279, 390
EarI CTCTTC 2 cut(s) 279, 390
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 124, 289
FaiI YATR 5 cut(s) 122, 287, 292, 359, 386
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 120, 285
FauI CCCGC 2 cut(s) 97, 311
Fnu4HI GCNGC 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 98
FspI TGCGCA 1 cut(s) 369
GlaI GCGC 4 cut(s) 36, 149, 151, 369
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 415
HgaI GACGC 2 cut(s) 18, 83
HhaI GCGC 4 cut(s) 37, 150, 152, 370
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 124, 289
Hin6I GCGC 4 cut(s) 35, 148, 150, 368
HinP1I GCGC 4 cut(s) 35, 148, 150, 368
HinfI GANTC 2 cut(s) 113, 176
HpaII CCGG 1 cut(s) 415
HphI GGTGA 1 cut(s) 325
Hpy188III TCNNGA 4 cut(s) 155, 164, 265, 350
Hpy99I CGWCG 4 cut(s) 77, 173, 176, 411
HpyAV CCTTC 4 cut(s) 10, 245, 291, 347
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 153, 186, 198
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 124, 289
HspAI GCGC 4 cut(s) 35, 148, 150, 368
Kzo9I GATC 2 cut(s) 189, 346
LmnI GCTCC 2 cut(s) 19, 207
LpnPI CCDG 6 cut(s) 86, 140, 210, 350, 363, 377
Lsp1109I GCAGC 1 cut(s) 109
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 88, 221
MalI GATC 2 cut(s) 191, 348
MboI GATC 2 cut(s) 189, 346
MboII GAAGA 5 cut(s) 25, 74, 266, 310, 407
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 4 cut(s) 36, 52, 141, 282
MroXI GAANNNNTTC 1 cut(s) 317
MspI CCGG 1 cut(s) 415
MvnI CGCG 2 cut(s) 77, 150
NcoI CCATGG 1 cut(s) 285
NdeII GATC 2 cut(s) 189, 346
NlaIII CATG 2 cut(s) 124, 289
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 88
NsbI TGCGCA 1 cut(s) 369
PauI GCGCGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 108
PteI GCGCGC 1 cut(s) 148
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 1 cut(s) 204
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 189, 346
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 204
SetI ASST 7 cut(s) 24, 84, 129, 204, 215, 274, 358
SfcI CTRYAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 65
SsiI CCGC 4 cut(s) 104, 205, 278, 304
SstI GAGCTC 1 cut(s) 204
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 5, 192
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 88
TspRI CASTG 1 cut(s) 190
XapI RAATTY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.