Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Reverse (-)

21428496 .. 21430398

Gene Structure 1903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTAGTGGAATCGCTCGTGGTCGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAGCCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGTAAAGCTGGGACTGATTGGGAAGGTGGATTCTTTCCATTAACGATGCACTTCAGTGAGGATTATCCGAGCAAACCTCCGAAATGTAAATTTCCACAAGGGTTTTTCCACCCTAATGTCTATCCATCTGGAACTGTCTGTCTCTCTATCCTTAACGAGGATTATGGATGGAGACCAGCCATCACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCGAATCCCGCTGACCCTGCACAGACAGATGGTTATCATCTCTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGGGTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0032446 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

160

Amino Acids

17.99

Weight (kDa)

8.33

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 151	4.7e-47	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	416, 429
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	54, 178
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	92, 298
AjnI	CCWGG	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	3 cut(s)	32, 149, 451
AluI	AGCT	3 cut(s)	32, 149, 451
Alw26I	GTCTC	3 cut(s)	83, 287, 307
AlwI	GGATC	2 cut(s)	416, 429
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	316, 457
BamHI	GGATCC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	5 cut(s)	95, 274, 303, 329, 392
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	477
BcoDI	GTCTC	3 cut(s)	83, 287, 307
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 298
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	61, 106, 314
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	92, 298
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	438
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	92, 298
BsmAI	GTCTC	3 cut(s)	83, 287, 307
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	2 cut(s)	416, 429
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	109, 277, 328
Bst6I	CTCTTC	2 cut(s)	30, 416
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	61, 106, 314
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	3 cut(s)	83, 287, 307
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 460
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	61, 106, 314
BtsIMutI	CAGTG	1 cut(s)	202
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	6 cut(s)	5, 32, 85, 149, 320, 451
CviKI_1	RGCY	6 cut(s)	5, 32, 85, 149, 320, 451
CviQI	GTAC	1 cut(s)	433
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	30, 416
EarI	CTCTTC	2 cut(s)	30, 416
Eco31I	GGTCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	54, 178
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	69, 137, 306
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	3 cut(s)	48, 113, 321
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	153
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	6 cut(s)	12, 58, 112, 171, 337, 373
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	316, 457
Hpy188I	TCNGA	2 cut(s)	210, 222
Hpy188III	TCNNGA	3 cut(s)	270, 353, 419
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	109, 277, 328
HpyCH4V	TGCA	4 cut(s)	132, 190, 389, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 460
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	421
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	1 cut(s)	177
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	47, 67, 403
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	1 cut(s)	230
MnlI	CCTC	6 cut(s)	33, 45, 75, 193, 228, 292
MseI	TTAA	2 cut(s)	182, 294
MslI	CAYNNNNRTG	4 cut(s)	66, 195, 255, 326
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	386, 460
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	423
OliI	CACNNNNGTG	1 cut(s)	195
PfeI	GAWTC	6 cut(s)	12, 58, 112, 171, 337, 373
PkrI	GCNGC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	4 cut(s)	66, 195, 255, 326
SaqAI	TTAA	2 cut(s)	182, 294
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	6 cut(s)	34, 142, 151, 169, 220, 453
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	4 cut(s)	66, 195, 255, 326
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	109, 277, 328
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	6 cut(s)	12, 58, 112, 171, 337, 373
Tru1I	TTAA	2 cut(s)	182, 294
Tru9I	TTAA	2 cut(s)	182, 294
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	451
TspRI	CASTG	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.