RchiOBHm_Chr5g0052931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001910
Physical Location & Seq
Forward (+)
55111737 .. 55113200
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33028

Sequence Viewer

Length: 213 bp
ATGATTTTTCGAAAAAGTTTCCAGTTTTGTATAAAGCTTCCATTTTCAGAAATTTTCCAAAAATATTTTCTTTTCTTTCCCATTTTGGAAACTCAGTTCATTTTCTCTCTCTCGAGCCGCGTCGGCACCTCTCCCTTCGCCGGCGTCTATCTTCCTCTTCCGGCCACCTCTGAGCAAGAAACCACGTCCAGCAGCTTCGCCTCACTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.02

Weight (kDa)

7.9

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 140
AjiI CACGTC 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 37, 195
AluI AGCT 2 cut(s) 37, 195
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 112
BanI GGYRCC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 204
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 2 cut(s) 118, 193
BlsI GCNGC 2 cut(s) 119, 194
BmeT110I CYCGRG 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 107, 162
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 141, 161
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 10
BspACI CCGC 1 cut(s) 118
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 106, 163
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 93, 171
BstFNI CGCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 164
BtrI CACGTC 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 2 cut(s) 109, 133
CviJI RGCY 4 cut(s) 37, 117, 164, 195
CviKI_1 RGCY 4 cut(s) 37, 117, 164, 195
DdeI CTNAG 2 cut(s) 93, 171
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 112
FaiI YATR 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 118, 193
Fsp4HI GCNGC 2 cut(s) 118, 193
GluI GCNGC 2 cut(s) 118, 193
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 141, 161
HgaI GACGC 2 cut(s) 109, 133
Hin1I GRCGYC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 35
HpaII CCGG 2 cut(s) 141, 161
Hpy188I TCNGA 3 cut(s) 49, 172, 212
Hpy188III TCNNGA 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 93, 171
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 144
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 35, 154, 174, 202
Lsp1109I GCAGC 1 cut(s) 204
MaeII ACGT 1 cut(s) 185
MboII GAAGA 2 cut(s) 143, 149
MluCI AATT 1 cut(s) 51
MnlI CCTC 4 cut(s) 139, 165, 178, 211
MreI CGCCGGCG 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 140
MspI CCGG 2 cut(s) 141, 161
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 123
NaeI GCCGGC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 127
NspV TTCGAA 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 119, 194
PspN4I GGNNCC 1 cut(s) 127
SatI GCNGC 2 cut(s) 118, 193
SetI ASST 5 cut(s) 39, 131, 170, 188, 197
Sfr274I CTCGAG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 10
SgeI CNNG 9 cut(s) 34, 124, 126, 131, 153, 173, 188, 196, 201
SgrAI CRCCGGYG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 51
SsiI CCGC 1 cut(s) 118
SspI AATATT 1 cut(s) 65
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 10, 113
TasI AATT 1 cut(s) 51
TauI GCSGC 1 cut(s) 120
TseI GCWGC 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 88
XapI RAATTY 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.