Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Forward (+)

5360491 .. 5362395

Gene Structure 1905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1078500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGAATGTCCGGAGGAATCGCGCGCGGTCGTCTCGCGGAGGAGCGAAAAGCGTGGCGGAAGAACCACCCCCATGGTTTTGTGGCGAAGCCGGAGACCGCTTCGGACGGCTCCGTCAATTTGATGGTGTGGCTGTGCATCATCCCCGGCAAACCCTCTACTGATTGGGAAGGTGGCTACTTTCCACTTACACTTAACTTCAGTGAGGATTACCCCAGCAAGCCCCCGAAATGCAAGTTCCCGCAGGGCTTTTTCCACCCCAATGTGTATCCTTCTGGAACTGTTTGTCTTTCAATTCTCAACGAGGACAAAGGTTGGAGGCCGGCCATCACAGTGAAGCAAATCCTCGTAGGCATTCAGGATTTGCTAGGCCAGCCTAATCCTGCTGATCCGGCACAAGCCGAAGGTTATCAACTCTTTATCCAGGAACCAGCTGAGTACAAGCGAAGAGTGCGACAGCAGGCAAAGCAATACCCACCTGTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

163

Amino Acids

18.21

Weight (kDa)

9.17

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	11 - 154	6.1e-45	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccII	CGCG	4 cut(s)	23, 25, 27, 38
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	5 cut(s)	27, 38, 58, 99, 242
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
Alw26I	GTCTC	2 cut(s)	38, 89
AlwI	GGATC	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	3 cut(s)	320, 324, 370
AspLEI	GCGC	2 cut(s)	25, 27
AsuC2I	CCSGG	1 cut(s)	147
BccI	CCATC	2 cut(s)	118, 335
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	38, 89
BfaI	CTAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	147, 425
BmiI	GGNNCC	2 cut(s)	112, 429
BmrFI	CCNGG	2 cut(s)	147, 425
BmsI	GCATC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	73, 145
BsaWI	WCCGGW	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	73, 145
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	426
BsePI	GCGCGC	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	4 cut(s)	23, 25, 27, 38
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	322, 326, 372
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	5 cut(s)	12, 92, 147, 323, 392
BsmAI	GTCTC	2 cut(s)	38, 89
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	322, 326, 372
Bso31I	GGTCTC	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	5 cut(s)	27, 38, 58, 99, 242
BspANI	GGCC	3 cut(s)	322, 326, 372
BspCNI	CTCAG	1 cut(s)	427
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	4 cut(s)	23, 25, 27, 38
BspLI	GGNNCC	2 cut(s)	112, 429
BspPI	GGATC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	73, 145
BssHII	GCGCGC	1 cut(s)	23
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	283, 334
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	5 cut(s)	25, 221, 324, 374, 462
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	4 cut(s)	23, 25, 27, 38
BstHHI	GCGC	2 cut(s)	25, 27
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	2 cut(s)	38, 89
BstMBI	GATC	1 cut(s)	388
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	373, 392, 451, 466
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	145, 423
BstUI	CGCG	4 cut(s)	23, 25, 27, 38
BstXI	CCANNNNNNTGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	322, 326, 372
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	208, 339
Cac8I	GCNNGC	5 cut(s)	25, 221, 324, 374, 462
CfoI	GCGC	2 cut(s)	25, 27
Cfr10I	RCCGGY	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	1 cut(s)	74
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 487
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	128
FseI	GGCCGGCC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	2 cut(s)	24, 26
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	322, 326, 372
HapII	CCGG	5 cut(s)	12, 92, 147, 323, 392
HhaI	GCGC	2 cut(s)	25, 27
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	23, 25
HinP1I	GCGC	2 cut(s)	23, 25
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	5 cut(s)	12, 92, 147, 323, 392
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	12, 276, 359
HpyAV	CCTTC	3 cut(s)	164, 282, 398
HpyCH4III	ACNGT	2 cut(s)	283, 334
HpyCH4V	TGCA	2 cut(s)	138, 234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	373, 392, 451, 466
HpyF3I	CTNAG	1 cut(s)	435
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	2 cut(s)	23, 25
Kpn2I	TCCGGA	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	43, 116
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	368
MalI	GATC	1 cut(s)	390
MauBI	CGCGCGCG	1 cut(s)	23
MboI	GATC	1 cut(s)	388
MboII	GAAGA	2 cut(s)	73, 459
MluCI	AATT	2 cut(s)	118, 294
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	7 cut(s)	8, 34, 166, 199, 298, 312, 356
MroI	TCCGGA	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	322
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	3 cut(s)	72, 261, 332
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	5 cut(s)	12, 92, 147, 323, 392
MspR9I	CCNGG	2 cut(s)	147, 425
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	4 cut(s)	23, 25, 27, 38
MwoI	GCNNNNNNNGC	4 cut(s)	373, 392, 451, 466
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	388
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	2 cut(s)	112, 429
PauI	GCGCGC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	112, 429
PteI	GCGCGC	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	434
RigI	GGCCGGCC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	3 cut(s)	72, 261, 332
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	147, 425
SetI	ASST	5 cut(s)	175, 316, 409, 436, 481
SfaNI	GCATC	1 cut(s)	147
SmiMI	CAYNNNNRTG	3 cut(s)	72, 261, 332
Sse9I	AATT	2 cut(s)	118, 294
SsiI	CCGC	5 cut(s)	27, 38, 58, 99, 242
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	145, 423
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	283, 334
TasI	AATT	2 cut(s)	118, 294
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	208, 339
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	208, 339
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.