Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029915.1

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 571

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

atgtctggaggtattgcacgcggtcgtctcgctgaggagcgcaagtcatggcggaagaaccatccccatggctttgtggcgaagccggagactttaactgatgggactgtgaatttgatggtgtggcattgcacaattccgggcaagactggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0032446 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

51

Amino Acids

5.63

Weight (kDa)

10.02

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	21, 52
AcsI	RAATTY	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	32, 83
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	69, 95, 112
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	32, 83
Bme1390I	CCNGG	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	86, 140
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	32, 83
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	2 cut(s)	21, 52
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	32, 83
BstMCI	CGRYCG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	42
CviAII	CATG	2 cut(s)	48, 68
CviJI	RGCY	2 cut(s)	72, 85
CviKI_1	RGCY	2 cut(s)	72, 85
DdeI	CTNAG	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	51, 71
FaiI	YATR	2 cut(s)	49, 69
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	47, 67
FokI	GGATG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	27
HapII	CCGG	2 cut(s)	86, 140
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	51, 71
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	86, 140
Hpy188III	TCNNGA	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	17, 132
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	51, 71
HspAI	GCGC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	2 cut(s)	99, 135
MboII	GAAGA	1 cut(s)	67
MluCI	AATT	2 cut(s)	112, 135
MnlI	CCTC	1 cut(s)	28
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	2 cut(s)	86, 140
MspR9I	CCNGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	67
NlaIII	CATG	2 cut(s)	51, 71
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	1 cut(s)	13
SgeI	CNNG	8 cut(s)	18, 30, 32, 41, 55, 60, 80, 98
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	112, 135
SsiI	CCGC	2 cut(s)	21, 52
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	2 cut(s)	112, 135
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
XapI	RAATTY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.