Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Forward (+)

75066011 .. 75068574

Gene Structure 2564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTGGAGGTATTGCACGCGGTCGTCTCGCTGAGGAGCGCAAGTCATGGCGCAAGAACCATCCCCATGGTTTTGTGGCGAAGCCGGAGACTTTACCTGATGGGACTGTGAATTTGATGGTGTGGCATTGCACAATTCCGGGCAAGACCGGGACTGACTGGGAGGGTGGGTACTTCCCGCTCACACTTCACTTCAGTGAAGACTACCCTAGCAAGCCTCCAAAGTGCAAATTCCCAGCAAATTTCTTCCACCCAAATGTATATCCATCTGGAACTGTCTGTCTATCAATCCTTAATGAGGACAGTGGTTGGAGACCAGCAATTACTGTGAAGCAAATTCTTGTGGGCATTCAGGATCTACTGGATCAGCCAAATCCCTCTGATCCTGCACAGACAGAAGGCTATCACCTCTTCATTCAGGATTCTACAGAGTACAAGAGAAGGGTTCGCCAGCAGGCCAAGCTGTACCCACCTCTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0032446 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

160

Amino Acids

18.07

Weight (kDa)

8.43

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 152	1.6e-46	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	21, 179
AclWI	GGATC	3 cut(s)	363, 372, 377
AcsI	RAATTY	4 cut(s)	112, 230, 241, 336
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	3 cut(s)	173, 434, 467
AfiI	CCNNNNNNNGG	2 cut(s)	298, 475
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw26I	GTCTC	3 cut(s)	32, 83, 307
AlwI	GGATC	3 cut(s)	363, 372, 377
AoxI	GGCC	1 cut(s)	456
ApoI	RAATTY	4 cut(s)	112, 230, 241, 336
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	2 cut(s)	42, 54
AsuC2I	CCSGG	2 cut(s)	141, 151
AsuHPI	GGTGA	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	4 cut(s)	69, 95, 112, 274
BcnI	CCSGG	2 cut(s)	141, 151
BcoDI	GTCTC	3 cut(s)	32, 83, 307
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	141, 151
BmrFI	CCNGG	2 cut(s)	141, 151
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	141, 151
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 475
Bse1I	ACTGG	2 cut(s)	164, 366
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	298, 475
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	164, 366
BseRI	GAGGAG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	3 cut(s)	86, 140, 150
BslFI	GGGAC	2 cut(s)	118, 166
BslI	CCNNNNNNNGG	2 cut(s)	298, 475
BsmAI	GTCTC	3 cut(s)	32, 83, 307
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	118, 166
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	355, 364, 382
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	2 cut(s)	21, 179
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	21
BspPI	GGATC	3 cut(s)	363, 372, 377
BspTNI	GGTCTC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	164, 366
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	3 cut(s)	355, 364, 382
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	109, 277, 305, 328
Bst6I	CTCTTC	1 cut(s)	416
BstC8I	GCNNGC	4 cut(s)	19, 215, 452, 456
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	42, 54
BstKTI	GATC	3 cut(s)	358, 367, 385
BstMAI	GTCTC	3 cut(s)	32, 83, 307
BstMBI	GATC	3 cut(s)	355, 364, 382
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstSCI	CCNGG	2 cut(s)	139, 149
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	202, 310
Cac8I	GCNNGC	4 cut(s)	19, 215, 452, 456
CfoI	GCGC	2 cut(s)	42, 54
Csp6I	GTAC	3 cut(s)	172, 433, 466
CviAII	CATG	2 cut(s)	48, 68
CviJI	RGCY	6 cut(s)	85, 217, 370, 402, 458, 463
CviKI_1	RGCY	6 cut(s)	85, 217, 370, 402, 458, 463
CviQI	GTAC	3 cut(s)	172, 433, 466
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	3 cut(s)	357, 366, 384
DpnII	GATC	3 cut(s)	355, 364, 382
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	51, 71
FaiI	YATR	3 cut(s)	49, 69, 262
FaqI	GGGAC	2 cut(s)	118, 166
FatI	CATG	2 cut(s)	47, 67
FauI	CCCGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	48
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	2 cut(s)	41, 53
GsaI	CCCAGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	3 cut(s)	86, 140, 150
HhaI	GCGC	2 cut(s)	42, 54
Hin1II	CATG	2 cut(s)	51, 71
Hin6I	GCGC	2 cut(s)	40, 52
HinP1I	GCGC	2 cut(s)	40, 52
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	3 cut(s)	86, 140, 150
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	4 cut(s)	6, 270, 353, 419
HpyAV	CCTTC	2 cut(s)	392, 435
HpyCH4III	ACNGT	4 cut(s)	109, 277, 305, 328
HpyCH4V	TGCA	4 cut(s)	17, 132, 228, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	51, 71
HspAI	GCGC	2 cut(s)	40, 52
Kzo9I	GATC	3 cut(s)	355, 364, 382
LmnI	GCTCC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	210
MalI	GATC	3 cut(s)	357, 366, 384
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	3 cut(s)	355, 364, 382
MboII	GAAGA	3 cut(s)	212, 238, 403
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	6 cut(s)	112, 135, 230, 241, 321, 336
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	28, 157, 228, 292, 388, 419, 483
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	3 cut(s)	66, 195, 255
MspI	CCGG	3 cut(s)	86, 140, 150
MspR9I	CCNGG	2 cut(s)	141, 151
Mva1269I	GAATGC	1 cut(s)	348
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	460
NciI	CCSGG	2 cut(s)	141, 151
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	355, 364, 382
NlaIII	CATG	2 cut(s)	51, 71
OliI	CACNNNNGTG	1 cut(s)	195
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	3 cut(s)	173, 434, 467
RsaNI	GTAC	3 cut(s)	172, 433, 466
RseI	CAYNNNNRTG	3 cut(s)	66, 195, 255
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	355, 364, 382
ScrFI	CCNGG	2 cut(s)	141, 151
SetI	ASST	5 cut(s)	13, 100, 411, 465, 475
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	3 cut(s)	66, 195, 255
Sse9I	AATT	6 cut(s)	112, 135, 230, 241, 321, 336
SsiI	CCGC	2 cut(s)	21, 179
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	139, 149
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	4 cut(s)	109, 277, 305, 328
TasI	AATT	6 cut(s)	112, 135, 230, 241, 321, 336
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	202, 310
TspDTI	ATGAA	1 cut(s)	403
TspRI	CASTG	2 cut(s)	202, 310
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	4 cut(s)	112, 230, 241, 336
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.