Rorug02G0134000

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
11561089 .. 11561562
474 bp
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UTR
Exon/CDS
Intron
Rorug02G0134000.1

Sequence Viewer

Length: 333 bp
ATGTTTGGAACAGCAATAAGGTTTATTGGGAGAAAACCGAAACCAAAGATGAAACCGATAGAGCTCAAAACCCCACCAGAGCAGACACAGACCATCACTAGGACCATCTTTGACATCGTGAAGGAGCACGGTCCTCTCACCATTTCTGAAACCTGGGATCACGTTAAGGAAGTTGGTTTAAGAGGACTGACGAGCAAGAGGCACATGAAGATAGTGTTGAGGTGGATGAAGGAGAGGCAGAAGCTTAGACAAATATGCAACCATGTAGGGCCTAATAAGCAGTTTATGTATACGACTTGGTTCACAAAACCCAGCAGCAGCCGAAACCTGTAA

Protein Analysis

110

Amino Acids

12.99

Weight (kDa)

10.69

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 290
AclWI GGATC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 99
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 2 cut(s) 64, 244
AluI AGCT 2 cut(s) 64, 244
Alw21I GWGCWC 2 cut(s) 66, 129
AlwI GGATC 1 cut(s) 165
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 315, 318
AspS9I GGNCC 3 cut(s) 102, 131, 269
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 2 cut(s) 102, 131
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 66, 129
BbvI GCAGC 1 cut(s) 327
BccI CCATC 2 cut(s) 101, 113
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 316, 319
BlsI GCNGC 2 cut(s) 317, 320
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 2 cut(s) 102, 131
BmgT120I GGNCC 3 cut(s) 102, 131, 269
BmrFI CCNGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 311
BshFI GGCC 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 66, 129
BslI CCNNNNNNNGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 66, 129
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 327
BstZ17I GTATAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 231
Cfr13I GGNCC 3 cut(s) 102, 131, 269
CviAII CATG 2 cut(s) 205, 263
CviJI RGCY 4 cut(s) 64, 244, 271, 321
CviKI_1 RGCY 4 cut(s) 64, 244, 271, 321
DdeI CTNAG 1 cut(s) 245
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 102, 131
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 2 cut(s) 208, 266
FaiI YATR 5 cut(s) 206, 256, 264, 287, 291
FatI CATG 2 cut(s) 204, 262
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 2 cut(s) 316, 319
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 316, 319
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 316, 319
GsaI CCCAGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 2 cut(s) 208, 266
HindIII AAGCTT 1 cut(s) 242
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 291, 303
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 291, 303
HpyAV CCTTC 2 cut(s) 115, 223
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 208, 266
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 4 cut(s) 90, 139, 166, 325
Lsp1109I GCAGC 1 cut(s) 327
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 66, 129
MnlI CCTC 5 cut(s) 144, 176, 192, 213, 228
MseI TTAA 2 cut(s) 165, 179
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 208, 266
PkrI GCNGC 2 cut(s) 317, 320
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 152
PspPI GGNCC 3 cut(s) 102, 131, 269
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 165, 179
SatI GCNGC 2 cut(s) 316, 319
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 3 cut(s) 102, 131, 269
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 2 cut(s) 66, 129
SetI ASST 7 cut(s) 23, 66, 155, 165, 224, 246, 330
SinI GGWCC 2 cut(s) 102, 131
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 165
Tru1I TTAA 2 cut(s) 165, 179
Tru9I TTAA 2 cut(s) 165, 179
TseI GCWGC 2 cut(s) 315, 318
TspDTI ATGAA 3 cut(s) 65, 221, 242
VpaK11BI GGWCC 2 cut(s) 102, 131
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.