Rmu_co8449227.1_g000001

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449227.1
Physical Location & Seq
Forward (+)
1 .. 660
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449227.1_g000001.1.cds

Sequence Viewer

Length: 330 bp
actgattgggagggtggcaactatccacttacactccagttcagtgaggattaccccagcaaacccccaaagtgcaagttccctcagggttttttccaccctaatgtttatccttctggaaccgtttgcctttcaattctcaatgaggataaggggtggaggcctgccattactgtgaagcaaatcctagtaggcattcaggacttgctagaccagcctaaccctgctgatcctgcacaaactgagggttatcagctcttcatccaggaaccagttgagtacaggagaagagtgcggcagcaggcaaagcaatatccatctgttatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.49

Weight (kDa)

5.72

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 295
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 84
BbvI GCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 2 cut(s) 188, 209
BisI GCNGC 2 cut(s) 296, 299
BlsI GCNGC 2 cut(s) 297, 300
Bme1390I CCNGG 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 121, 270
BmrFI CCNGG 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse1I ACTGG 2 cut(s) 37, 272
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 98, 234
BseNI ACTGG 2 cut(s) 37, 272
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 97, 235
BspLI GGNNCC 2 cut(s) 121, 270
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 37, 272
BssMI GATC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 124, 175
Bst6I CTCTTC 2 cut(s) 263, 283
BstC8I GCNNGC 2 cut(s) 165, 303
BstDEI CTNAG 2 cut(s) 84, 243
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 214, 233, 307
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 165, 303
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 3 cut(s) 163, 217, 256
CviKI_1 RGCY 3 cut(s) 163, 217, 256
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 84, 243
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 263, 283
EarI CTCTTC 2 cut(s) 263, 283
Eco147I AGGCCT 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 296, 299
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 296, 299
FspBI CTAG 2 cut(s) 188, 209
GluI GCNGC 2 cut(s) 296, 299
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 2 cut(s) 117, 200
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 124, 175
HpyCH4V TGCA 2 cut(s) 75, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 233, 307
HpyF3I CTNAG 2 cut(s) 84, 243
Kzo9I GATC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 263
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 2 cut(s) 188, 209
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 250, 300
MluCI AATT 1 cut(s) 135
MnlI CCTC 6 cut(s) 4, 40, 93, 139, 153, 238
MslI CAYNNNNRTG 2 cut(s) 102, 173
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 214, 233, 307
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 121, 270
PceI AGGCCT 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 263
PctI GAATGC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 2 cut(s) 297, 300
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 121, 270
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 102, 173
SapI GCTCTTC 1 cut(s) 263
SatI GCNGC 2 cut(s) 296, 299
Sau3AI GATC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 266
SetI ASST 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 102, 173
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 1 cut(s) 295
SspMI CTAG 2 cut(s) 188, 209
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 124, 175
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 298
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 49
XspI CTAG 2 cut(s) 188, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.