Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Reverse (-)

17438499 .. 17440650

Gene Structure 2152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTGGAGGTATTGCACGCGGTCGTCTCGCAGAGGAGCGCAAGTCATGGCGGAAGAACCATCCCCATACTCGGGCAGGAATGGCCTTCCTTTGGGGTTTTTTCCCTGATATCTATAGTGTCTTTATCTTTATGTTTTATTTTGTATTCTACTTTCTTATTCCTTTTGTGTGGAGATTATTGTTTCCATTCCTTAATAATATCGTGTTGCAGACTGACTGGGAGGGTGGGTACTTCCCACTCACACTTCACTTCAGTGAAGACTACCCTAGCAAGCCTCCAAAGTGCAAATTCCCAGCAAATTTCTTCCACCCGAATGTATATCCATCTGGAACTGTCTGTCTATCAATCCTTAATGAGGACAGTGGTTGGAGACCAGCAATTACTGTGAAGCAAATTCTTGTGGGCATTCAGGATCTACTGGATCAGCCAAATCCCTCTGATCCTGCACAGACAGAAGGCTATCACCTCTTCATTCAGGATTCTACAGAGTACAAGAGAAGGGTTCGCCAGCAGGCCAAGCTGTACCCACCTCTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0032446 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

181

Amino Acids

21.06

Weight (kDa)

8.87

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	71 - 172	1.9e-36	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	21, 52
AclWI	GGATC	3 cut(s)	423, 432, 437
AcsI	RAATTY	3 cut(s)	290, 301, 396
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	3 cut(s)	233, 494, 527
AfiI	CCNNNNNNNGG	5 cut(s)	72, 73, 93, 358, 535
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	32, 367
AlwI	GGATC	3 cut(s)	423, 432, 437
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	2 cut(s)	84, 516
ApoI	RAATTY	3 cut(s)	290, 301, 396
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	267
BccI	CCATC	2 cut(s)	69, 334
BcoDI	GTCTC	2 cut(s)	32, 367
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	115, 486
BmeT110I	CYCGRG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 215, 245
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 73, 93, 358, 535
Bse1I	ACTGG	2 cut(s)	224, 426
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	5 cut(s)	72, 73, 93, 358, 535
BseNI	ACTGG	2 cut(s)	224, 426
BseRI	GAGGAG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	86, 518
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	72
BslI	CCNNNNNNNGG	5 cut(s)	72, 73, 93, 358, 535
BsmAI	GTCTC	2 cut(s)	32, 367
BsmBI	CGTCTC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	86, 518
Bso31I	GGTCTC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	415, 424, 442
BspACI	CCGC	2 cut(s)	21, 52
BspANI	GGCC	2 cut(s)	86, 518
BspFNI	CGCG	1 cut(s)	21
BspPI	GGATC	3 cut(s)	423, 432, 437
BspTNI	GGTCTC	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	224, 426
BssMI	GATC	3 cut(s)	415, 424, 442
Bst4CI	ACNGT	3 cut(s)	337, 365, 388
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	19, 275, 512, 516
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	418, 427, 445
BstMAI	GTCTC	2 cut(s)	32, 367
BstMBI	GATC	3 cut(s)	415, 424, 442
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 520
BstSFI	CTRYAG	2 cut(s)	115, 486
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	86, 518
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	262, 370
Cac8I	GCNNGC	4 cut(s)	19, 275, 512, 516
CfoI	GCGC	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	232, 493, 526
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	6 cut(s)	86, 277, 430, 462, 518, 523
CviKI_1	RGCY	6 cut(s)	86, 277, 430, 462, 518, 523
CviQI	GTAC	3 cut(s)	232, 493, 526
DpnI	GATC	3 cut(s)	417, 426, 444
DpnII	GATC	3 cut(s)	415, 424, 442
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	367
Eco32I	GATATC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	51
FaiI	YATR	5 cut(s)	49, 69, 117, 134, 322
FatI	CATG	1 cut(s)	47
FokI	GGATG	1 cut(s)	48
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	86, 518
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	482
HphI	GGTGA	1 cut(s)	458
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	4 cut(s)	6, 330, 413, 479
HpyAV	CCTTC	3 cut(s)	97, 452, 495
HpyCH4III	ACNGT	3 cut(s)	337, 365, 388
HpyCH4V	TGCA	4 cut(s)	17, 211, 288, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 520
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	415, 424, 442
LmnI	GCTCC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	270
MalI	GATC	3 cut(s)	417, 426, 444
MboI	GATC	3 cut(s)	415, 424, 442
MboII	GAAGA	4 cut(s)	67, 272, 298, 463
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	4 cut(s)	290, 301, 381, 396
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	7 cut(s)	28, 217, 288, 352, 448, 479, 543
MseI	TTAA	2 cut(s)	195, 354
MslI	CAYNNNNRTG	2 cut(s)	255, 315
Mva1269I	GAATGC	1 cut(s)	408
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	83, 520
NdeII	GATC	3 cut(s)	415, 424, 442
NlaIII	CATG	1 cut(s)	51
OliI	CACNNNNGTG	1 cut(s)	255
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	3 cut(s)	233, 494, 527
RsaNI	GTAC	3 cut(s)	232, 493, 526
RseI	CAYNNNNRTG	2 cut(s)	255, 315
SaqAI	TTAA	2 cut(s)	195, 354
Sau3AI	GATC	3 cut(s)	415, 424, 442
SetI	ASST	4 cut(s)	13, 471, 525, 535
SfcI	CTRYAG	2 cut(s)	115, 486
SmiMI	CAYNNNNRTG	2 cut(s)	255, 315
Sse9I	AATT	4 cut(s)	290, 301, 381, 396
SsiI	CCGC	2 cut(s)	21, 52
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	337, 365, 388
TasI	AATT	4 cut(s)	290, 301, 381, 396
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	195, 354
Tru9I	TTAA	2 cut(s)	195, 354
TscAI	CASTG	2 cut(s)	262, 370
TspDTI	ATGAA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	262, 370
XagI	CCTNNNNNAGG	1 cut(s)	356
XapI	RAATTY	3 cut(s)	290, 301, 396
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.