Prupe.1G431700_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001910
Physical Location & Seq
Forward (+)
36977935 .. 36980017
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G431700.3

Sequence Viewer

Length: 483 bp
ATGTCCGGAGGGATCGCGCGCGGTCGTCTCGCCGAGGAGCGAAAAGCCTGGCGTAAGAATCACCCCCATGGTTTTGTGGCGAAGCCAGAGACTGGTCCAGATGGCGCCATCAATTTGATGATCTGGCAGTGCATCATCCCTGGCAAGAGCTCTACTGATTGGGAAGGTGGCTACTTTCCACTTACACTTCACTTCAGTGAGGATTACCCCAGCAAGCCCCCTAAGTGTAAGTTCCCACAGGGCTTTTTCCACCCCAATGTCTATCCTTCTGGAACTGTTTGTCTTTCGATTCTCAACGAGGACAGTGGGTGGAGGCCAGCCATTACAGTGAAGCAAATCCTAGTAGGCATTCAGGATTTGCTAGATCAACCCAACCCTGCTGATCCAGCACAAACTGACGGTTATCAGCTCTTCATCCAGGAACCGGCTGAGTACAAGCGAAGAGTGCGGCAGCAGGCAAAGCAATATCCACCTGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206
Pfam Domains
Protein Families
UQ_con

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

8.43

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 92
AccII CGCG 3 cut(s) 17, 19, 21
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 2 cut(s) 21, 448
AclWI GGATC 2 cut(s) 20, 377
AcuI CTGAAG 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 92, 424
AjnI CCWGG 3 cut(s) 47, 139, 417
AleI CACNNNNGTG 1 cut(s) 195
AluBI AGCT 2 cut(s) 150, 409
AluI AGCT 2 cut(s) 150, 409
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 32, 83
AlwI GGATC 2 cut(s) 20, 377
AlwNI CAGNNNCTG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 451
AspLEI GCGC 3 cut(s) 19, 21, 107
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 95
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 95, 116
BciT130I CCWGG 3 cut(s) 49, 141, 419
BcoDI GTCTC 2 cut(s) 32, 83
BfaI CTAG 2 cut(s) 341, 362
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 2 cut(s) 449, 452
BlsI GCNGC 2 cut(s) 450, 453
Bme1390I CCNGG 3 cut(s) 49, 141, 419
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 106, 423
BmrFI CCNGG 3 cut(s) 49, 141, 419
BmsI GCATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 33, 67, 139
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 424
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 3 cut(s) 49, 141, 419
BseDI CCNNGG 3 cut(s) 33, 67, 139
BseGI GGATG 2 cut(s) 135, 414
BseLI CCNNNNNNNGG 2 cut(s) 92, 424
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 97
BsePI GCGCGC 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 3 cut(s) 17, 19, 21
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 6, 425
BslI CCNNNNNNNGG 2 cut(s) 92, 424
BsmAI GTCTC 2 cut(s) 32, 83
BsmBI CGTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 4 cut(s) 12, 120, 364, 382
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 2 cut(s) 21, 448
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 421
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 3 cut(s) 17, 19, 21
BspLI GGNNCC 2 cut(s) 106, 423
BspPI GGATC 2 cut(s) 20, 377
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 33, 67, 139
BssHII GCGCGC 1 cut(s) 17
BssMI GATC 4 cut(s) 12, 120, 364, 382
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 3 cut(s) 49, 141, 419
Bst4CI ACNGT 4 cut(s) 277, 305, 328, 401
Bst6I CTCTTC 2 cut(s) 416, 436
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 19, 215, 318, 456
BstDEI CTNAG 2 cut(s) 222, 429
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 135, 414
BstFNI CGCG 3 cut(s) 17, 19, 21
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 19, 21, 107
BstKTI GATC 4 cut(s) 15, 123, 367, 385
BstMAI GTCTC 2 cut(s) 32, 83
BstMBI GATC 4 cut(s) 12, 120, 364, 382
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 386, 445, 460
BstNI CCWGG 3 cut(s) 49, 141, 419
BstSCI CCNGG 3 cut(s) 47, 139, 417
BstUI CGCG 3 cut(s) 17, 19, 21
BstV1I GCAGC 1 cut(s) 463
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 135, 414
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 4 cut(s) 134, 202, 310, 333
Cac8I GCNNGC 4 cut(s) 19, 215, 318, 456
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 3 cut(s) 19, 21, 107
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 68
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 222, 429
DinI GGCGCC 1 cut(s) 106
DpnI GATC 4 cut(s) 14, 122, 366, 384
DpnII GATC 4 cut(s) 12, 120, 364, 382
Eam1104I CTCTTC 2 cut(s) 416, 436
EarI CTCTTC 2 cut(s) 416, 436
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 150
EcoRII CCWGG 3 cut(s) 47, 139, 417
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 152
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 71
FaiI YATR 2 cut(s) 69, 481
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 449, 452
FokI GGATG 2 cut(s) 122, 401
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 449, 452
FspBI CTAG 2 cut(s) 341, 362
GlaI GCGC 3 cut(s) 18, 20, 106
GluI GCNGC 2 cut(s) 449, 452
GsaI CCCAGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 316
HapII CCGG 2 cut(s) 6, 425
HhaI GCGC 3 cut(s) 19, 21, 107
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 3 cut(s) 17, 19, 105
HinP1I GCGC 3 cut(s) 17, 19, 105
HinfI GANTC 2 cut(s) 58, 289
HpaII CCGG 2 cut(s) 6, 425
HphI GGTGA 1 cut(s) 53
Hpy188III TCNNGA 4 cut(s) 6, 98, 270, 353
HpyAV CCTTC 2 cut(s) 158, 276
HpyCH4III ACNGT 4 cut(s) 277, 305, 328, 401
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 445, 460
HpyF3I CTNAG 2 cut(s) 222, 429
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 3 cut(s) 17, 19, 105
KasI GGCGCC 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 5
Kzo9I GATC 4 cut(s) 12, 120, 364, 382
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 1 cut(s) 141
MaeI CTAG 2 cut(s) 341, 362
MalI GATC 4 cut(s) 14, 122, 366, 384
MauBI CGCGCGCG 1 cut(s) 17
MboI GATC 4 cut(s) 12, 120, 364, 382
MboII GAAGA 2 cut(s) 403, 453
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 1 cut(s) 112
Mly113I GGCGCC 1 cut(s) 105
MnlI CCTC 4 cut(s) 28, 193, 292, 306
MroI TCCGGA 1 cut(s) 5
MslI CAYNNNNRTG 4 cut(s) 66, 195, 255, 326
MspI CCGG 2 cut(s) 6, 425
MspR9I CCNGG 3 cut(s) 49, 141, 419
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 3 cut(s) 49, 141, 419
MvnI CGCG 3 cut(s) 17, 19, 21
MwoI GCNNNNNNNGC 3 cut(s) 386, 445, 460
NarI GGCGCC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 67
NdeII GATC 4 cut(s) 12, 120, 364, 382
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 2 cut(s) 106, 423
NmeAIII GCCGAG 1 cut(s) 58
OliI CACNNNNGTG 1 cut(s) 195
PauI GCGCGC 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 58, 289
PflMI CCANNNNNTGG 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 2 cut(s) 450, 453
PluTI GGCGCC 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 152
Psp6I CCWGG 3 cut(s) 47, 139, 417
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 3 cut(s) 47, 139, 417
PspN4I GGNNCC 2 cut(s) 106, 423
PspPI GGNCC 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 92
PteI GCGCGC 1 cut(s) 17
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 4 cut(s) 66, 195, 255, 326
SacI GAGCTC 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 416
SatI GCNGC 2 cut(s) 449, 452
Sau3AI GATC 4 cut(s) 12, 120, 364, 382
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 49, 141, 419
SduI GDGCHC 1 cut(s) 152
SetI ASST 4 cut(s) 152, 169, 411, 475
SfaNI GCATC 1 cut(s) 141
SfoI GGCGCC 1 cut(s) 106
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 4 cut(s) 66, 195, 255, 326
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 21, 448
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 2 cut(s) 341, 362
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 47, 139, 417
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 4 cut(s) 277, 305, 328, 401
TaqI TCGA 1 cut(s) 287
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 2 cut(s) 58, 289
TscAI CASTG 4 cut(s) 134, 202, 310, 333
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 403
TspRI CASTG 4 cut(s) 134, 202, 310, 333
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 95
XspI CTAG 2 cut(s) 341, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.