Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001047.1

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Forward (+)

26000 .. 31334

Gene Structure 5335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001047.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgtctggaggtattgcacgcggtcgtctcgctgaggagcgcaagtcatggcggaagaaccatccccatggctttgtggcgaagccggagactttaactgatgggactgtgaatttgatggtgtggcattgcacaattccgggcaagactgggatcaacccggtgaccgtgcttccagtcctagtctctccaagagccgactaccagtgctactgccaccgatacaaccagcgaagcaagggcaagaagccctttctcggaaggctagagaagaactttgtggcggggttggtgctctcctcgtccacaacgcttgaagaagaagtcaagtcaagagacgcccccgacgactgcactccacggtgttgtcacgcctgctcacacgctcaaaagagacagtttgcaagccaactgtgcatcgtcagaagccagaggttttctaacgaagatcacgatgagttcaaattcggatttggtgctcaagctggagtcggcgcttacagtttctttccaaggctcaactacagacacggcagtgttgattgcgacgacttcaattgcgttgataataggggttttggtggttatgaggttgagttcttcattgcaatggtttggttccttgcctccagtgatctgggctgggcgtccggacccgaaagaccgaggacccgacccgaaccgatgaaaaaagcccgattcggttcggttttagtattgaaattttcggttcgcttcactctctctctcccgcgctcgaaccggccggaaactgggtttcccttcgccggcttcgttcttgctccacaggccaccaatcttcaccaaacttcttccattggcttcgtatggtccttgcgcacccgtatgtggtggccttgcacggcggcgcggcctgtaacggcggcggtgagcttgtttcgatttaagctcgattttagtcaacgccggttttctcctagctccggccaccaaaacttccgatccttggctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0032446 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

332

Amino Acids

37.4

Weight (kDa)

9.75

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	860
AccII	CGCG	3 cut(s)	21, 754, 892
AccIII	TCCGGA	1 cut(s)	650
AciI	CCGC	8 cut(s)	21, 52, 284, 752, 887, 892, 905, 908
AclWI	GGATC	2 cut(s)	161, 978
AcoI	YGGCCR	2 cut(s)	764, 967
AcsI	RAATTY	3 cut(s)	112, 464, 722
AcyI	GRCGYC	2 cut(s)	339, 647
AfiI	CCNNNNNNNGG	6 cut(s)	257, 773, 788, 870, 965, 988
AgsI	TTSAA	4 cut(s)	317, 463, 556, 721
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	4 cut(s)	485, 915, 931, 963
AluI	AGCT	4 cut(s)	485, 915, 931, 963
Alw21I	GWGCWC	2 cut(s)	297, 481
Alw26I	GTCTC	5 cut(s)	32, 83, 190, 330, 388
AlwI	GGATC	2 cut(s)	161, 978
Aor13HI	TCCGGA	1 cut(s)	650
AoxI	GGCC	5 cut(s)	764, 810, 875, 893, 967
ApoI	RAATTY	3 cut(s)	112, 464, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AspLEI	GCGC	5 cut(s)	42, 497, 756, 861, 892
AspS9I	GGNCC	3 cut(s)	653, 669, 852
AsuC2I	CCSGG	2 cut(s)	141, 161
AsuHPI	GGTGA	3 cut(s)	175, 815, 922
AvaII	GGWCC	3 cut(s)	653, 669, 852
Bbv12I	GWGCWC	2 cut(s)	297, 481
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	69, 95, 112
BceAI	ACGGC	3 cut(s)	547, 900, 918
BcnI	CCSGG	2 cut(s)	141, 161
BcoDI	GTCTC	5 cut(s)	32, 83, 190, 330, 388
BfaI	CTAG	3 cut(s)	182, 266, 960
BfmI	CTRYAG	1 cut(s)	523
BfoI	RGCGCY	1 cut(s)	498
BisI	GCNGC	3 cut(s)	888, 893, 906
BlsI	GCNGC	3 cut(s)	889, 894, 907
Bme1390I	CCNGG	2 cut(s)	141, 161
Bme18I	GGWCC	3 cut(s)	653, 669, 852
BmgT120I	GGNCC	3 cut(s)	653, 669, 852
BmiI	GGNNCC	4 cut(s)	620, 655, 671, 993
BmrFI	CCNGG	2 cut(s)	141, 161
BmrI	ACTGGG	2 cut(s)	159, 783
BmsI	GCATC	1 cut(s)	426
BmuI	ACTGGG	2 cut(s)	159, 783
BpmI	CTGGAG	3 cut(s)	27, 507, 613
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	465
BpuMI	CCSGG	2 cut(s)	141, 161
BsaHI	GRCGYC	2 cut(s)	339, 647
BsaJI	CCNNGG	5 cut(s)	67, 359, 512, 665, 987
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	6 cut(s)	257, 773, 788, 870, 965, 988
Bse118I	RCCGGY	3 cut(s)	762, 788, 948
Bse1I	ACTGG	5 cut(s)	154, 176, 205, 630, 778
Bse3DI	GCAATG	3 cut(s)	127, 603, 615
BseAI	TCCGGA	1 cut(s)	650
BseDI	CCNNGG	5 cut(s)	67, 359, 512, 665, 987
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	6 cut(s)	257, 773, 788, 870, 965, 988
BseMI	GCAATG	3 cut(s)	127, 603, 615
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	5 cut(s)	154, 176, 205, 630, 778
BseRI	GAGGAG	2 cut(s)	50, 289
BseX3I	CGGCCG	1 cut(s)	764
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	3 cut(s)	21, 754, 892
Bsh1285I	CGRYCG	2 cut(s)	25, 767
BshFI	GGCC	5 cut(s)	766, 812, 877, 895, 969
BsiEI	CGRYCG	2 cut(s)	25, 767
BsiHKAI	GWGCWC	2 cut(s)	297, 481
BsiSI	CCGG	9 cut(s)	86, 140, 161, 651, 763, 767, 789, 949, 966
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	6 cut(s)	257, 773, 788, 870, 965, 988
BsmAI	GTCTC	5 cut(s)	32, 83, 190, 330, 388
BsmBI	CGTCTC	2 cut(s)	32, 330
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	5 cut(s)	766, 812, 877, 895, 969
Bsp1286I	GDGCHC	2 cut(s)	297, 481
Bsp13I	TCCGGA	1 cut(s)	650
Bsp143I	GATC	4 cut(s)	153, 448, 634, 983
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	8 cut(s)	21, 52, 284, 752, 887, 892, 905, 908
BspANI	GGCC	5 cut(s)	766, 812, 877, 895, 969
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	1 cut(s)	650
BspFNI	CGCG	3 cut(s)	21, 754, 892
BspLI	GGNNCC	4 cut(s)	620, 655, 671, 993
BspPI	GGATC	2 cut(s)	161, 978
BsrDI	GCAATG	3 cut(s)	127, 603, 615
BsrFI	RCCGGY	3 cut(s)	762, 788, 948
BsrI	ACTGG	5 cut(s)	154, 176, 205, 630, 778
BssAI	RCCGGY	3 cut(s)	762, 788, 948
BssECI	CCNNGG	5 cut(s)	67, 359, 512, 665, 987
BssMI	GATC	4 cut(s)	153, 448, 634, 983
BssNI	GRCGYC	2 cut(s)	339, 647
BssT1I	CCWWGG	3 cut(s)	67, 512, 987
Bst4CI	ACNGT	6 cut(s)	109, 169, 363, 399, 414, 503
BstACI	GRCGYC	2 cut(s)	339, 647
BstC8I	GCNNGC	4 cut(s)	19, 376, 406, 790
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	2 cut(s)	67, 359
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	3 cut(s)	21, 754, 892
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	5 cut(s)	42, 497, 756, 861, 892
BstKTI	GATC	4 cut(s)	156, 451, 637, 986
BstMAI	GTCTC	5 cut(s)	32, 83, 190, 330, 388
BstMBI	GATC	4 cut(s)	153, 448, 634, 983
BstMCI	CGRYCG	2 cut(s)	25, 767
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 809
BstPI	GGTNACC	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	139, 159
BstSFI	CTRYAG	1 cut(s)	523
BstUI	CGCG	3 cut(s)	21, 754, 892
BstXI	CCANNNNNNTGG	2 cut(s)	68, 637
BstZI	CGGCCG	1 cut(s)	764
BsuRI	GGCC	5 cut(s)	766, 812, 877, 895, 969
BtgI	CCRYGG	2 cut(s)	67, 359
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	212, 541, 637
Cac8I	GCNNGC	4 cut(s)	19, 376, 406, 790
CfoI	GCGC	5 cut(s)	42, 497, 756, 861, 892
Cfr10I	RCCGGY	3 cut(s)	762, 788, 948
Cfr13I	GGNCC	3 cut(s)	653, 669, 852
CseI	GACGC	2 cut(s)	347, 636
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	3 cut(s)	48, 68, 996
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	4 cut(s)	155, 450, 636, 985
DpnII	GATC	4 cut(s)	153, 448, 634, 983
EaeI	YGGCCR	2 cut(s)	764, 967
EagI	CGGCCG	1 cut(s)	764
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	764
Eco130I	CCWWGG	3 cut(s)	67, 512, 987
Eco47I	GGWCC	3 cut(s)	653, 669, 852
Eco52I	CGGCCG	1 cut(s)	764
Eco91I	GGTNACC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	669
EcoO65I	GGTNACC	1 cut(s)	163
EcoT14I	CCWWGG	3 cut(s)	67, 512, 987
ErhI	CCWWGG	3 cut(s)	67, 512, 987
Esp3I	CGTCTC	2 cut(s)	32, 330
FaeI	CATG	3 cut(s)	51, 71, 999
FaiI	YATR	6 cut(s)	49, 69, 588, 850, 869, 997
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	47, 67, 995
FauI	CCCGC	2 cut(s)	277, 759
Fnu4HI	GCNGC	3 cut(s)	888, 893, 906
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	888, 893, 906
FspBI	CTAG	3 cut(s)	182, 266, 960
FspI	TGCGCA	1 cut(s)	860
GlaI	GCGC	5 cut(s)	41, 496, 755, 860, 891
GluI	GCNGC	3 cut(s)	888, 893, 906
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	3 cut(s)	27, 507, 613
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	5 cut(s)	766, 812, 877, 895, 969
HapII	CCGG	9 cut(s)	86, 140, 161, 651, 763, 767, 789, 949, 966
HgaI	GACGC	2 cut(s)	347, 636
HhaI	GCGC	5 cut(s)	42, 497, 756, 861, 892
Hin1I	GRCGYC	2 cut(s)	339, 647
Hin1II	CATG	3 cut(s)	51, 71, 999
Hin6I	GCGC	5 cut(s)	40, 495, 754, 859, 890
HinP1I	GCGC	5 cut(s)	40, 495, 754, 859, 890
HincII	GTYRAC	1 cut(s)	944
HindII	GTYRAC	1 cut(s)	944
HinfI	GANTC	2 cut(s)	489, 699
HpaII	CCGG	9 cut(s)	86, 140, 161, 651, 763, 767, 789, 949, 966
HphI	GGTGA	3 cut(s)	175, 815, 922
Hpy166II	GTNNAC	2 cut(s)	306, 944
Hpy188I	TCNGA	4 cut(s)	260, 425, 470, 983
Hpy188III	TCNNGA	4 cut(s)	6, 333, 452, 651
Hpy8I	GTNNAC	2 cut(s)	306, 944
Hpy99I	CGWCG	2 cut(s)	350, 551
HpyAV	CCTTC	2 cut(s)	255, 793
HpyCH4III	ACNGT	6 cut(s)	109, 169, 363, 399, 414, 503
HpyCH4V	TGCA	7 cut(s)	17, 132, 354, 404, 417, 608, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 809
HpyF3I	CTNAG	1 cut(s)	33
Hsp92I	GRCGYC	2 cut(s)	339, 647
Hsp92II	CATG	3 cut(s)	51, 71, 999
HspAI	GCGC	5 cut(s)	40, 495, 754, 859, 890
Kpn2I	TCCGGA	1 cut(s)	650
KroI	GCCGGC	1 cut(s)	788
KroNI	GCCGGC	1 cut(s)	790
Kzo9I	GATC	4 cut(s)	153, 448, 634, 983
LmnI	GCTCC	4 cut(s)	37, 808, 968, 997
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	3 cut(s)	182, 266, 960
MaeIII	GTNAC	3 cut(s)	163, 368, 898
MalI	GATC	4 cut(s)	155, 450, 636, 985
MboI	GATC	4 cut(s)	153, 448, 634, 983
MboII	GAAGA	8 cut(s)	67, 283, 329, 332, 458, 592, 812, 825
MfeI	CAATTG	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	297, 481
MluCI	AATT	5 cut(s)	112, 135, 464, 556, 722
MlyI	GAGTC	1 cut(s)	498
MnlI	CCTC	6 cut(s)	28, 310, 426, 583, 637, 660
MroI	TCCGGA	1 cut(s)	650
MroNI	GCCGGC	1 cut(s)	788
MseI	TTAA	2 cut(s)	95, 927
MslI	CAYNNNNRTG	4 cut(s)	66, 534, 608, 866
MspI	CCGG	9 cut(s)	86, 140, 161, 651, 763, 767, 789, 949, 966
MspR9I	CCNGG	2 cut(s)	141, 161
MunI	CAATTG	1 cut(s)	556
MvnI	CGCG	3 cut(s)	21, 754, 892
MwoI	GCNNNNNNNGC	2 cut(s)	414, 809
NaeI	GCCGGC	1 cut(s)	790
NciI	CCSGG	2 cut(s)	141, 161
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	153, 448, 634, 983
NgoMIV	GCCGGC	1 cut(s)	788
NlaIII	CATG	3 cut(s)	51, 71, 999
NlaIV	GGNNCC	4 cut(s)	620, 655, 671, 993
NmuCI	GTSAC	2 cut(s)	163, 368
NsbI	TGCGCA	1 cut(s)	860
OliI	CACNNNNGTG	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	3 cut(s)	345, 450, 792
PdiI	GCCGGC	1 cut(s)	790
PfeI	GAWTC	1 cut(s)	699
PkrI	GCNGC	3 cut(s)	889, 894, 907
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	669
PspEI	GGTNACC	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	642
PspN4I	GGNNCC	4 cut(s)	620, 655, 671, 993
PspPI	GGNCC	3 cut(s)	653, 669, 852
PspPPI	RGGWCCY	1 cut(s)	669
RseI	CAYNNNNRTG	4 cut(s)	66, 534, 608, 866
SaqAI	TTAA	2 cut(s)	95, 927
SatI	GCNGC	3 cut(s)	888, 893, 906
Sau3AI	GATC	4 cut(s)	153, 448, 634, 983
Sau96I	GGNCC	3 cut(s)	653, 669, 852
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	141, 161
SduI	GDGCHC	2 cut(s)	297, 481
SetI	ASST	7 cut(s)	13, 437, 487, 594, 917, 933, 965
SfaNI	GCATC	1 cut(s)	426
SfcI	CTRYAG	1 cut(s)	523
SinI	GGWCC	3 cut(s)	653, 669, 852
SmiMI	CAYNNNNRTG	4 cut(s)	66, 534, 608, 866
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	5 cut(s)	112, 135, 464, 556, 722
SsiI	CCGC	8 cut(s)	21, 52, 284, 752, 887, 892, 905, 908
SspMI	CTAG	3 cut(s)	182, 266, 960
StyD4I	CCNGG	2 cut(s)	139, 159
StyI	CCWWGG	3 cut(s)	67, 512, 987
TaaI	ACNGT	6 cut(s)	109, 169, 363, 399, 414, 503
TaqI	TCGA	3 cut(s)	758, 922, 933
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	5 cut(s)	112, 135, 464, 556, 722
TauI	GCSGC	3 cut(s)	890, 895, 908
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	2 cut(s)	95, 927
Tru9I	TTAA	2 cut(s)	95, 927
TscAI	CASTG	3 cut(s)	212, 541, 637
TseFI	GTSAC	2 cut(s)	163, 368
Tsp45I	GTSAC	2 cut(s)	163, 368
TspDTI	ATGAA	2 cut(s)	592, 701
TspRI	CASTG	3 cut(s)	212, 541, 637
VpaK11BI	GGWCC	3 cut(s)	653, 669, 852
XapI	RAATTY	3 cut(s)	112, 464, 722
XspI	CTAG	3 cut(s)	182, 266, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.