Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001910

Physical Location & Seq

Genomic Coordinates Reverse (-)

15574349 .. 15576727

Gene Structure 2379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1176400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTAGAGGTATAGCTCGTGGCCGTCTGGCGGAGGAGCACAAGGCCTGGCAGAAGAACCACCCTCACGGTTTTGTTGCGAAGCCGGAGACTTTACCAGATGGGACGGTTAATTTGATGGTTTGGCATTGCACAATTCCTAGCAAGACCGGTACTGACTGGGATGGGGGTTTCTTTCCACTTACACTTCACTTCAGTGAAGACTACCCTAGCAAGCCTCCAAAATGTAAATTCCCGCCAGGTTTCTTCCATCCCAATGTATATCCATCTGGAACTGTCTGTCTGTCAATTCTTAATGAGGACAGTGGTTTGAGACCAGTAATAACTGTGAAGCAAATTCTCGTGGGAATTCAGGATTTGATGGACCAGCCAAATCCTGCTGATCCTGCACAGACAGAAGGGTATCACCTATTCATTCAAGATGCCACAGAGTATAAGAAGAGGGTTCGGCAGCAGTCGAAGCAATACCCACCTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0022414 GO:0032446 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

7.77

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 151	2.7e-42	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57870
fragaria_vesca	FvH4_1g16390 FvH4_2g33980 FvH4_2g33980 FvH4_2g33980
malus_domestica	MD02G1176400.v1.1 MD08G1095700.v1.1 MD15G1078500.v1.1 MD15G1286800.v1.1
prunus_persica	Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.1G431700_v2.0.a1 Prupe.6G231300_v2.0.a1
pyrus_communis	pycom02g14260 pycom08g07770 pycom15g25010
rosa_chinensis	RchiOBHm_Chr2g0106261 RchiOBHm_Chr2g0167981 RchiOBHm_Chr5g0052931 RchiOBHm_Chr6g0308431
rosa_laevigata	RLG00000017484
rosa_multiflora	Rmu_co8313989.1_g000001 Rmu_co8449227.1_g000001 Rmu_sc0001047.1_g000006 Rmu_sc0008603.1_g000014 Rmu_sc0011796.1_g000003 Rmu_sc0029915.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137320 Rroxscaffold_7G00160140
rosa_rugosa	Rorug02G0133900 Rorug02G0134000 Rorug02G0134100 Rorug02G0134200 Rorug06G0366700
rosa_samantha	Rh2AG185000 Rh2BG195300 Rh2CG190100 Rh2DG191200 Rh6AG476300 Rh6BG486500 Rh6CG491700 Rh6DG477800
rosa_wichuraiana	Rw2G014450 Rw6G041550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 236
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	3 cut(s)	230, 336, 348
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	47, 238
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	83, 307
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	2 cut(s)	22, 45
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	230, 336, 348
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AsiGI	ACCGGT	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	364
BauI	CACGAG	2 cut(s)	18, 341
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	6 cut(s)	95, 112, 158, 258, 274, 355
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	49, 240
BcoDI	GTCTC	2 cut(s)	83, 307
BfaI	CTAG	3 cut(s)	6, 141, 210
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	2 cut(s)	49, 240
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	49, 240
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	164, 317
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	49, 240
BseGI	GGATG	2 cut(s)	169, 250
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	164, 317
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	24, 47
BshTI	ACCGGT	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	86, 150
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	83, 307
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	24, 47
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	2 cut(s)	32, 236
BspANI	GGCC	2 cut(s)	24, 47
BspPI	GGATC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	164, 317
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	1 cut(s)	382
BssSI	CACGAG	2 cut(s)	18, 341
Bst2BI	CACGAG	2 cut(s)	18, 341
Bst2UI	CCWGG	2 cut(s)	49, 240
Bst4CI	ACNGT	5 cut(s)	71, 109, 277, 305, 328
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	169, 250
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	2 cut(s)	83, 307
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 460
BstNI	CCWGG	2 cut(s)	49, 240
BstSCI	CCNGG	2 cut(s)	47, 238
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	24, 47
BtsCI	GGATG	2 cut(s)	169, 250
BtsIMutI	CAGTG	2 cut(s)	202, 310
Cac8I	GCNNGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	149
CviJI	RGCY	6 cut(s)	17, 24, 47, 85, 217, 370
CviKI_1	RGCY	6 cut(s)	17, 24, 47, 85, 217, 370
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	47, 238
FaiI	YATR	3 cut(s)	14, 262, 435
FaqI	GGGAC	1 cut(s)	118
FauI	CCCGC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	2 cut(s)	176, 237
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	3 cut(s)	6, 141, 210
GluI	GCNGC	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	24, 47
HapII	CCGG	2 cut(s)	86, 150
HpaII	CCGG	2 cut(s)	86, 150
HphI	GGTGA	1 cut(s)	398
Hpy188III	TCNNGA	4 cut(s)	6, 270, 353, 419
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	5 cut(s)	71, 109, 277, 305, 328
HpyCH4V	TGCA	2 cut(s)	132, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 460
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	3 cut(s)	6, 141, 210
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	4 cut(s)	67, 212, 238, 451
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	6 cut(s)	112, 135, 230, 288, 336, 348
MnlI	CCTC	6 cut(s)	28, 75, 228, 292, 435, 483
MseI	TTAA	2 cut(s)	111, 294
MslI	CAYNNNNRTG	2 cut(s)	195, 255
MspI	CCGG	2 cut(s)	86, 150
MspR9I	CCNGG	2 cut(s)	49, 240
MvaI	CCWGG	2 cut(s)	49, 240
MwoI	GCNNNNNNNGC	2 cut(s)	386, 460
NdeII	GATC	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	47
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	47, 238
PspGI	CCWGG	2 cut(s)	47, 238
PspPI	GGNCC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	195, 255
SaqAI	TTAA	2 cut(s)	111, 294
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	49, 240
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	5 cut(s)	13, 19, 244, 411, 475
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	195, 255
Sse9I	AATT	6 cut(s)	112, 135, 230, 288, 336, 348
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	32, 236
SspMI	CTAG	3 cut(s)	6, 141, 210
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	47, 238
TaaI	ACNGT	5 cut(s)	71, 109, 277, 305, 328
TaqI	TCGA	1 cut(s)	458
TasI	AATT	6 cut(s)	112, 135, 230, 288, 336, 348
Tru1I	TTAA	2 cut(s)	111, 294
Tru9I	TTAA	2 cut(s)	111, 294
TscAI	CASTG	2 cut(s)	202, 310
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	403
TspRI	CASTG	2 cut(s)	202, 310
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	3 cut(s)	230, 336, 348
XbaI	TCTAGA	1 cut(s)	5
XspI	CTAG	3 cut(s)	6, 141, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.