Rh6DG477800

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001910
Physical Location & Seq
Reverse (-)
64305931 .. 64307773
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG477800.1

Sequence Viewer

Length: 483 bp
ATGTCTGGAGGAATCGCGCGTGGTCGCCTCGCAGAGGAACGAAAATCCTGGCGTAAGAATCACCCCCATGGTTTTGTGGCGAAGCCAGAGACCGGTGCAGATGGCTCCGTCAATTTGATGGTTTGGCAGTGCTTAATCCCTGGAAAACCCGCTACTGATTGGGAGGGTGGCAACTATCCACTTACACTCCAGTTCAGTGAGGATTACCCCAGCAAACCCCCAAAGTGCAAGTTCCCTCAGGGTTTTTTCCACCCTAATGTTTATCCTTCTGGAACCGTTTGCCTTTCAATTCTCAATGAGGATAAGGGGTGGAGGCCTGCCATTACTGTGAAGCAAATCCTAGTAGGCATTCAGGACTTGCTAGACCAGCCTAACCCTGCTGATCCAGCACAAACTGAGGGTTATCAGCTCTTCATCCAGGAACCAGTTGAGTACAGAAGAAGAGTGCGGCAGCAGGCAAAGCAATATCCATCTGTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko04064 ko04120 ko05206 map03013 map04064 map04120 map05206
Pfam Domains
Protein Families
UQ_con

Protein Analysis

160

Amino Acids

18.02

Weight (kDa)

8.77

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 152 2.2e-45 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 19
AciI CCGC 2 cut(s) 150, 448
AclWI GGATC 1 cut(s) 377
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 34, 92
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 3 cut(s) 47, 139, 417
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 377
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 451
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 237
BbvI GCAGC 1 cut(s) 463
BccI CCATC 3 cut(s) 95, 112, 478
BciT130I CCWGG 3 cut(s) 49, 141, 419
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 2 cut(s) 341, 362
BisI GCNGC 2 cut(s) 449, 452
BlsI GCNGC 2 cut(s) 450, 453
Bme1390I CCNGG 3 cut(s) 49, 141, 419
BmiI GGNNCC 3 cut(s) 106, 274, 423
BmrFI CCNGG 3 cut(s) 49, 141, 419
BpmI CTGGAG 2 cut(s) 27, 173
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 67, 139
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 92
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 190, 425
Bse21I CCTNAGG 1 cut(s) 237
BseBI CCWGG 3 cut(s) 49, 141, 419
BseDI CCNNGG 2 cut(s) 67, 139
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 34, 92
BseMII CTCAG 2 cut(s) 251, 387
BseNI ACTGG 2 cut(s) 190, 425
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 17, 19
BshFI GGCC 1 cut(s) 316
BshTI ACCGGT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 34, 92
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 382
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 2 cut(s) 150, 448
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 250, 388
BspFNI CGCG 2 cut(s) 17, 19
BspLI GGNNCC 3 cut(s) 106, 274, 423
BspPI GGATC 1 cut(s) 377
BspQI GCTCTTC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 190, 425
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 67, 139
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 3 cut(s) 49, 141, 419
Bst4CI ACNGT 2 cut(s) 277, 328
Bst6I CTCTTC 2 cut(s) 416, 436
BstC8I GCNNGC 2 cut(s) 318, 456
BstDEI CTNAG 2 cut(s) 237, 396
BstDSI CCRYGG 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 2 cut(s) 17, 19
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 3 cut(s) 367, 386, 460
BstNI CCWGG 3 cut(s) 49, 141, 419
BstSCI CCNGG 3 cut(s) 47, 139, 417
BstUI CGCG 2 cut(s) 17, 19
BstV1I GCAGC 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 134, 202
Cac8I GCNNGC 2 cut(s) 318, 456
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 1 cut(s) 433
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 1 cut(s) 68
CviJI RGCY 5 cut(s) 85, 105, 316, 370, 409
CviKI_1 RGCY 5 cut(s) 85, 105, 316, 370, 409
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 237, 396
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 416, 436
EarI CTCTTC 2 cut(s) 416, 436
Eco130I CCWWGG 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRII CCWGG 3 cut(s) 47, 139, 417
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 71
FaiI YATR 1 cut(s) 69
FatI CATG 1 cut(s) 67
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 449, 452
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 2 cut(s) 449, 452
FspBI CTAG 2 cut(s) 341, 362
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 449, 452
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 2 cut(s) 27, 173
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 12, 58
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 3 cut(s) 6, 270, 353
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 2 cut(s) 277, 328
HpyCH4V TGCA 2 cut(s) 98, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 386, 460
HpyF3I CTNAG 2 cut(s) 237, 396
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 382
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 463
MaeI CTAG 2 cut(s) 341, 362
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 3 cut(s) 403, 450, 453
MluCI AATT 2 cut(s) 112, 288
MnlI CCTC 8 cut(s) 28, 38, 157, 193, 246, 292, 306, 391
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 3 cut(s) 66, 255, 326
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 3 cut(s) 49, 141, 419
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 3 cut(s) 49, 141, 419
MvnI CGCG 2 cut(s) 17, 19
MwoI GCNNNNNNNGC 3 cut(s) 367, 386, 460
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 382
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 3 cut(s) 106, 274, 423
PceI AGGCCT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 12, 58
PfoI TCCNGGA 1 cut(s) 417
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 2 cut(s) 450, 453
Psp6I CCWGG 3 cut(s) 47, 139, 417
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 3 cut(s) 47, 139, 417
PspN4I GGNNCC 3 cut(s) 106, 274, 423
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 3 cut(s) 66, 255, 326
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 2 cut(s) 449, 452
Sau3AI GATC 1 cut(s) 382
ScrFI CCNGG 3 cut(s) 49, 141, 419
SetI ASST 1 cut(s) 411
SmiMI CAYNNNNRTG 3 cut(s) 66, 255, 326
Sse9I AATT 2 cut(s) 112, 288
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 2 cut(s) 150, 448
SspMI CTAG 2 cut(s) 341, 362
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 3 cut(s) 47, 139, 417
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 277, 328
TasI AATT 2 cut(s) 112, 288
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 2 cut(s) 12, 58
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 2 cut(s) 134, 202
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 403
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 134, 202
XagI CCTNNNNNAGG 1 cut(s) 32
XspI CTAG 2 cut(s) 341, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.