AT4G00030

plastid-lipid associated protein PAP fibrillin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004403
Physical Location & Seq
Forward (+)
13527 .. 14413
887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00030.1

Sequence Viewer

Length: 639 bp
ATGGCGCTCGCGCTCTCGCTGTCGGCATGTTCTCCTCCACTCCGCCGCACTCGTCGTGCCGGTTTTCGAACAAGCTGCTCGATCTTCGCGAATCCAGCACAGCGAGCCAAGAGGAAGCTGCTTGAGCTGATCTCCGAGGAGGATCGAGGTCTGAGAACCCAGAAAGACCCCAAGAAGCGAGATGAAATCGTGAACGCCATCGAATCCATGACGGTTATCGGGCGCAGCTCCATCACCACAGACGACTCTCTATCTGCCACGTGGCGGCTCTTGTGGACGACGGAGAAGGAACAGTTGTTCATCATAGAAAAGGCAGGCTTGTTTGGGACGACCGCCGGAGACGTTTTGCAGGTGATCGATGTGAATAAACGGATCCTCAATAACGTCATCACTTTCCCGCCGGACGGGGTTTTCTTCGTACGCTCCGATATCGATATCGCTTCCCCGCAGAGAGTCAATTTCAGATTCAATAGTGCGGTATTGAGAGGGAAGAACTGGGAGCTCCCACTGCCACCATTTGGGAAGGGCTGGTTTGAGAATGTGTATATGGACGGTGAGATCAGAGTGGCCAAGGACATCAGAGGAGACTACTTAATTGTTGATCGTGCTCCTTATAACTGGACTGAATCATTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

212

Amino Acids

24.07

Weight (kDa)

9.35

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 34 - 200 2e-44 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AarI CACCTGC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 518
AccII CGCG 2 cut(s) 11, 89
AciI CCGC 7 cut(s) 43, 46, 265, 333, 398, 446, 476
AclWI GGATC 3 cut(s) 150, 367, 380
AcoI YGGCCR 1 cut(s) 567
AcvI CACGTG 1 cut(s) 261
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 3 cut(s) 264, 404, 518
AgsI TTSAA 1 cut(s) 469
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 5 cut(s) 75, 118, 127, 228, 502
AluI AGCT 5 cut(s) 75, 118, 127, 228, 502
Alw21I GWGCWC 2 cut(s) 504, 610
Alw26I GTCTC 2 cut(s) 333, 579
AlwI GGATC 3 cut(s) 150, 367, 380
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 3 cut(s) 75, 118, 225
AspLEI GCGC 3 cut(s) 7, 13, 225
AsuHPI GGTGA 3 cut(s) 226, 364, 566
AsuII TTCGAA 1 cut(s) 67
BalI TGGCCA 1 cut(s) 569
BamHI GGATCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 504
BbrPI CACGTG 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 504, 610
BbvI GCAGC 3 cut(s) 62, 105, 237
BccI CCATC 2 cut(s) 206, 239
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BcoDI GTCTC 2 cut(s) 333, 579
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 5 cut(s) 46, 76, 119, 226, 266
BlsI GCNGC 5 cut(s) 47, 77, 120, 227, 267
BmiI GGNNCC 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu14I TTCGAA 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 2 cut(s) 357, 432
BsaAI YACGTR 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 135, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 404, 518
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 500, 623
BseCI ATCGAT 2 cut(s) 357, 432
BseDI CCNNGG 2 cut(s) 135, 570
BseLI CCNNNNNNNGG 3 cut(s) 264, 404, 518
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 500, 623
BseRI GAGGAG 3 cut(s) 24, 152, 597
BseXI GCAGC 3 cut(s) 62, 105, 237
Bsh1236I CGCG 2 cut(s) 11, 89
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 1 cut(s) 569
BshVI ATCGAT 2 cut(s) 357, 432
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 2 cut(s) 504, 610
BsiSI CCGG 3 cut(s) 60, 336, 401
BsiWI CGTACG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 3 cut(s) 264, 404, 518
BsmAI GTCTC 2 cut(s) 333, 579
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 504, 610
Bsp143I GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
Bsp68I TCGCGA 1 cut(s) 89
BspACI CCGC 7 cut(s) 43, 46, 265, 333, 398, 446, 476
BspANI GGCC 1 cut(s) 569
BspCNI CTCAG 1 cut(s) 144
BspDI ATCGAT 2 cut(s) 357, 432
BspFNI CGCG 2 cut(s) 11, 89
BspLI GGNNCC 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 3 cut(s) 150, 367, 380
BspT104I TTCGAA 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 500, 623
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 135, 570
BssMI GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
BssT1I CCWWGG 1 cut(s) 570
Bst4CI ACNGT 3 cut(s) 214, 294, 554
BstBAI YACGTR 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 3 cut(s) 9, 105, 316
BstDEI CTNAG 1 cut(s) 152
BstFNI CGCG 2 cut(s) 11, 89
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 13, 225
BstKTI GATC 7 cut(s) 84, 132, 145, 357, 375, 561, 604
BstMAI GTCTC 2 cut(s) 333, 579
BstMBI GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 4 cut(s) 95, 104, 124, 508
BstNSI RCATGY 1 cut(s) 30
BstUI CGCG 2 cut(s) 11, 89
BstV1I GCAGC 3 cut(s) 62, 105, 237
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
Bsu15I ATCGAT 2 cut(s) 357, 432
BsuRI GGCC 1 cut(s) 569
BsuTUI ATCGAT 2 cut(s) 357, 432
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 1 cut(s) 506
BtuMI TCGCGA 1 cut(s) 89
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 9, 105, 316
CfoI GCGC 3 cut(s) 7, 13, 225
Cfr10I RCCGGY 1 cut(s) 59
ClaI ATCGAT 2 cut(s) 357, 432
Csp6I GTAC 1 cut(s) 419
CviAII CATG 2 cut(s) 27, 208
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 1 cut(s) 152
DpnI GATC 7 cut(s) 83, 131, 144, 356, 374, 560, 603
DpnII GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
EaeI YGGCCR 1 cut(s) 567
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 504
Eco32I GATATC 2 cut(s) 430, 436
Eco53kI GAGCTC 1 cut(s) 502
Eco72I CACGTG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 502
EcoRV GATATC 2 cut(s) 430, 436
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 570
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 30, 211
FaiI YATR 7 cut(s) 28, 209, 305, 546, 548, 615, 637
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 1 cut(s) 340
FatI CATG 2 cut(s) 26, 207
FauI CCCGC 2 cut(s) 405, 453
Fnu4HI GCNGC 5 cut(s) 46, 76, 119, 226, 266
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 5 cut(s) 46, 76, 119, 226, 266
GlaI GCGC 3 cut(s) 6, 12, 224
GluI GCNGC 5 cut(s) 46, 76, 119, 226, 266
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 569
HapII CCGG 3 cut(s) 60, 336, 401
HhaI GCGC 3 cut(s) 7, 13, 225
Hin1II CATG 2 cut(s) 30, 211
Hin6I GCGC 3 cut(s) 5, 11, 223
HinP1I GCGC 3 cut(s) 5, 11, 223
HinfI GANTC 6 cut(s) 91, 203, 245, 453, 465, 626
HpaII CCGG 3 cut(s) 60, 336, 401
HphI GGTGA 3 cut(s) 226, 364, 566
Hpy166II GTNNAC 2 cut(s) 193, 276
Hpy188I TCNGA 6 cut(s) 136, 153, 427, 464, 563, 581
Hpy188III TCNNGA 2 cut(s) 88, 190
Hpy8I GTNNAC 2 cut(s) 193, 276
Hpy99I CGWCG 2 cut(s) 57, 283
HpyAV CCTTC 2 cut(s) 280, 517
HpyCH4III ACNGT 3 cut(s) 214, 294, 554
HpyCH4IV ACGT 3 cut(s) 260, 342, 384
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 104, 124, 508
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 3 cut(s) 260, 342, 384
Hsp92II CATG 2 cut(s) 30, 211
HspAI GCGC 3 cut(s) 5, 11, 223
Kzo9I GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
LmnI GCTCC 5 cut(s) 233, 428, 499, 507, 613
Lsp1109I GCAGC 3 cut(s) 62, 105, 237
MaeII ACGT 3 cut(s) 260, 342, 384
MalI GATC 7 cut(s) 83, 131, 144, 356, 374, 560, 603
MboI GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
MboII GAAGA 3 cut(s) 76, 406, 502
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 504, 610
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 2 cut(s) 457, 594
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 2 cut(s) 239, 462
MnlI CCTC 8 cut(s) 45, 105, 130, 133, 140, 386, 479, 575
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 3 cut(s) 60, 336, 401
MvnI CGCG 2 cut(s) 11, 89
MwoI GCNNNNNNNGC 4 cut(s) 95, 104, 124, 508
NdeII GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
NlaIII CATG 2 cut(s) 30, 211
NlaIV GGNNCC 1 cut(s) 374
NruI TCGCGA 1 cut(s) 89
NspI RCATGY 1 cut(s) 30
NspV TTCGAA 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 340
PcsI WCGNNNNNNNCGW 2 cut(s) 86, 423
PfeI GAWTC 4 cut(s) 91, 203, 465, 626
Pfl23II CGTACG 1 cut(s) 418
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 5 cut(s) 47, 77, 120, 227, 267
PleI GAGTC 2 cut(s) 239, 461
PmaCI CACGTG 1 cut(s) 261
PmlI CACGTG 1 cut(s) 261
PpsI GAGTC 2 cut(s) 239, 461
Ppu21I YACGTR 1 cut(s) 261
PsiI TTATAA 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 504
PspCI CACGTG 1 cut(s) 261
PspLI CGTACG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 374
PsuI RGATCY 1 cut(s) 372
RruI TCGCGA 1 cut(s) 89
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 5 cut(s) 46, 76, 119, 226, 266
Sau3AI GATC 7 cut(s) 81, 129, 142, 354, 372, 558, 601
SchI GAGTC 2 cut(s) 239, 462
SduI GDGCHC 2 cut(s) 504, 610
SfuI TTCGAA 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 457, 594
SsiI CCGC 7 cut(s) 43, 46, 265, 333, 398, 446, 476
SstI GAGCTC 1 cut(s) 504
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 214, 294, 554
TaiI ACGT 3 cut(s) 263, 345, 387
TaqI TCGA 6 cut(s) 67, 80, 145, 201, 357, 432
TasI AATT 2 cut(s) 457, 594
TauI GCSGC 2 cut(s) 48, 268
TfiI GAWTC 4 cut(s) 91, 203, 465, 626
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 1 cut(s) 513
TseI GCWGC 3 cut(s) 75, 118, 225
TspDTI ATGAA 2 cut(s) 198, 289
TspGWI ACGGA 2 cut(s) 296, 385
TspRI CASTG 1 cut(s) 513
Van91I CCANNNNNTGG 1 cut(s) 518
XceI RCATGY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.