pycom07g09700

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004403
Physical Location & Seq
Reverse (-)
9050313 .. 9052801
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09700.1

Sequence Viewer

Length: 624 bp
ATGGCCACGTGCCTCCCCTTCCGCGCTATCCCCCTCAAACCCCACTTCACCCGCCCCGGTAAAATCACCTGCTCCGCCCCCACCGCCCAATCGCAGCTCTTCAAGCAACGCCTCCTTAACCTCATCGGCGACCAGGACCGGGGCCTCATGACCCAGAACAACCCCACAAAGCTCGCCTCCATCGTCAAGGCCATCGACGACCTGGCTGATCTTGGCCGAGACAGCGTCACCACCGGCGGCTCCCTCTCGGCCACATGGCGGCTGCTCTGGACCACGGAGAAGGAGCAGCTCTTCATCATCCAGAACGCTTCCTTATTCGGCACTCAAACCGGCGACGTCTTGCAGGTGATCGATGTCGGCCAAAGGGTCCTCAACAATGTCATCACTTTTCCTCCGGATGGGGTTTTCTTCGTCCGCTCTGATATCGCCGTCGCTTCAAATCAGAGGGTTAATTTCAAATTTACAAGTGCAGTTCTAAGAGGGAAAAGCTGGGAAATTCCATTGCCGCCGTTCGGGCAGGGCTGGTTTGACACTGTGTACCTTGATGACGAGATTCGAGTTGTGAAGGATATCCGAGGAGACTATTTGGTTGTAGACCGTGCTCCCTACACTTGGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

208

Amino Acids

23.16

Weight (kDa)

8.58

Isoelectric Point (pI)

21.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 34 - 198 1.1e-34 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 77, 334
AatII GACGTC 1 cut(s) 339
Acc36I ACCTGC 2 cut(s) 77, 334
AccBSI CCGCTC 1 cut(s) 417
AccI GTMKAC 1 cut(s) 594
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 8 cut(s) 22, 52, 75, 84, 237, 259, 415, 506
AcoI YGGCCR 4 cut(s) 3, 214, 249, 358
AcsI RAATTY 2 cut(s) 458, 495
AcvI CACGTG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 5 cut(s) 139, 258, 398, 512, 612
AgsI TTSAA 3 cut(s) 103, 438, 457
AjnI CCWGG 2 cut(s) 132, 201
AluBI AGCT 4 cut(s) 97, 172, 289, 489
AluI AGCT 4 cut(s) 97, 172, 289, 489
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 213, 573
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 6 cut(s) 3, 142, 189, 214, 249, 358
ApeKI GCWGC 3 cut(s) 94, 262, 286
ApoI RAATTY 2 cut(s) 458, 495
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 4 cut(s) 136, 142, 270, 367
AsuC2I CCSGG 2 cut(s) 57, 140
AsuHPI GGTGA 4 cut(s) 40, 58, 220, 358
AvaII GGWCC 3 cut(s) 136, 270, 367
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 3 cut(s) 106, 249, 298
BccI CCATC 3 cut(s) 188, 200, 392
BceAI ACGGC 2 cut(s) 413, 493
BciT130I CCWGG 2 cut(s) 134, 203
BcnI CCSGG 2 cut(s) 57, 140
BcoDI GTCTC 2 cut(s) 213, 573
BfuAI ACCTGC 2 cut(s) 77, 334
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 6 cut(s) 95, 238, 260, 263, 287, 506
BlsI GCNGC 6 cut(s) 96, 239, 261, 264, 288, 507
Bme1390I CCNGG 4 cut(s) 57, 134, 140, 203
Bme18I GGWCC 3 cut(s) 136, 270, 367
BmgT120I GGNCC 4 cut(s) 136, 142, 270, 367
BmiI GGNNCC 3 cut(s) 143, 241, 368
BmrFI CCNGG 4 cut(s) 57, 134, 140, 203
BpuMI CCSGG 2 cut(s) 57, 140
Bsa29I ATCGAT 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 55, 139, 273, 574
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 258, 398, 512, 612
Bse118I RCCGGY 2 cut(s) 233, 329
Bse3DI GCAATG 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 134, 203
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 4 cut(s) 55, 139, 273, 574
BseGI GGATG 2 cut(s) 297, 403
BseLI CCNNNNNNNGG 5 cut(s) 139, 258, 398, 512, 612
BseMI GCAATG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 591
BseXI GCAGC 3 cut(s) 106, 249, 298
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 6 cut(s) 5, 144, 191, 216, 251, 360
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 5 cut(s) 57, 139, 234, 330, 395
BslI CCNNNNNNNGG 5 cut(s) 139, 258, 398, 512, 612
BsmAI GTCTC 2 cut(s) 213, 573
BsnI GGCC 6 cut(s) 5, 144, 191, 216, 251, 360
Bsp1286I GDGCHC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 2 cut(s) 208, 348
BspACI CCGC 8 cut(s) 22, 52, 75, 84, 237, 259, 415, 506
BspANI GGCC 6 cut(s) 5, 144, 191, 216, 251, 360
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 143, 241, 368
BspMI ACCTGC 2 cut(s) 77, 334
BspQI GCTCTTC 2 cut(s) 104, 296
BsrBI CCGCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 500
BsrFI RCCGGY 2 cut(s) 233, 329
BssAI RCCGGY 2 cut(s) 233, 329
BssECI CCNNGG 4 cut(s) 55, 139, 273, 574
BssMI GATC 2 cut(s) 208, 348
BssNI GRCGYC 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 134, 203
Bst4CI ACNGT 2 cut(s) 535, 599
Bst6I CTCTTC 2 cut(s) 104, 296
BstACI GRCGYC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 297, 403
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 211, 351
BstMAI GTCTC 2 cut(s) 213, 573
BstMBI GATC 2 cut(s) 208, 348
BstMWI GCNNNNNNNGC 4 cut(s) 83, 103, 222, 514
BstNI CCWGG 2 cut(s) 134, 203
BstSCI CCNGG 4 cut(s) 55, 132, 138, 201
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 106, 249, 298
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 6 cut(s) 5, 144, 191, 216, 251, 360
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 297, 403
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 2 cut(s) 77, 334
Cac8I GCNNGC 1 cut(s) 174
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 2 cut(s) 233, 329
Cfr13I GGNCC 4 cut(s) 136, 142, 270, 367
ClaI ATCGAT 1 cut(s) 351
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 538
CviAII CATG 2 cut(s) 148, 255
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 1 cut(s) 476
DpnI GATC 2 cut(s) 210, 350
DpnII GATC 2 cut(s) 208, 348
EaeI YGGCCR 4 cut(s) 3, 214, 249, 358
Eam1104I CTCTTC 2 cut(s) 104, 296
EarI CTCTTC 2 cut(s) 104, 296
EciI GGCGGA 1 cut(s) 64
Eco32I GATATC 2 cut(s) 424, 571
Eco47I GGWCC 3 cut(s) 136, 270, 367
Eco72I CACGTG 1 cut(s) 9
EcoO109I RGGNCCY 2 cut(s) 142, 367
EcoRII CCWGG 2 cut(s) 132, 201
EcoRV GATATC 2 cut(s) 424, 571
FaeI CATG 2 cut(s) 151, 258
FaiI YATR 2 cut(s) 149, 256
FatI CATG 2 cut(s) 147, 254
FauI CCCGC 1 cut(s) 59
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 6 cut(s) 95, 238, 260, 263, 287, 506
FokI GGATG 2 cut(s) 284, 410
Fsp4HI GCNGC 6 cut(s) 95, 238, 260, 263, 287, 506
GlaI GCGC 1 cut(s) 25
GluI GCNGC 6 cut(s) 95, 238, 260, 263, 287, 506
GsaI CCCAGC 1 cut(s) 493
HaeIII GGCC 6 cut(s) 5, 144, 191, 216, 251, 360
HapII CCGG 5 cut(s) 57, 139, 234, 330, 395
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 151, 258
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 553
HpaII CCGG 5 cut(s) 57, 139, 234, 330, 395
HphI GGTGA 4 cut(s) 40, 58, 220, 358
Hpy166II GTNNAC 2 cut(s) 538, 595
Hpy188I TCNGA 3 cut(s) 421, 444, 575
Hpy188III TCNNGA 4 cut(s) 148, 268, 301, 395
Hpy8I GTNNAC 2 cut(s) 538, 595
Hpy99I CGWCG 3 cut(s) 200, 338, 434
HpyAV CCTTC 3 cut(s) 28, 274, 559
HpyCH4III ACNGT 2 cut(s) 535, 599
HpyCH4IV ACGT 2 cut(s) 8, 336
HpyCH4V TGCA 2 cut(s) 343, 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 103, 222, 514
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 8, 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 151, 258
HspAI GCGC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 2 cut(s) 208, 348
LguI GCTCTTC 2 cut(s) 104, 296
LmnI GCTCC 4 cut(s) 77, 245, 283, 607
Lsp1109I GCAGC 3 cut(s) 106, 249, 298
MaeII ACGT 2 cut(s) 8, 336
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 210, 350
MbiI CCGCTC 1 cut(s) 417
MboI GATC 2 cut(s) 208, 348
MboII GAAGA 3 cut(s) 91, 283, 400
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 451, 458, 495
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 394
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 117, 450
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 5 cut(s) 57, 139, 234, 330, 395
MspR9I CCNGG 4 cut(s) 57, 134, 140, 203
MvaI CCWGG 2 cut(s) 134, 203
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 83, 103, 222, 514
NciI CCSGG 2 cut(s) 57, 140
NdeII GATC 2 cut(s) 208, 348
NlaIII CATG 2 cut(s) 151, 258
NlaIV GGNNCC 3 cut(s) 143, 241, 368
NmeAIII GCCGAG 2 cut(s) 227, 242
NmuCI GTSAC 1 cut(s) 226
PagI TCATGA 1 cut(s) 147
PaqCI CACCTGC 2 cut(s) 77, 334
PciSI GCTCTTC 2 cut(s) 104, 296
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 1 cut(s) 553
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 6 cut(s) 96, 239, 261, 264, 288, 507
PmaCI CACGTG 1 cut(s) 9
PmlI CACGTG 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 132, 201
PspCI CACGTG 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 2 cut(s) 132, 201
PspN4I GGNNCC 3 cut(s) 143, 241, 368
PspPI GGNCC 4 cut(s) 136, 142, 270, 367
PspPPI RGGWCCY 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SapI GCTCTTC 2 cut(s) 104, 296
SaqAI TTAA 2 cut(s) 117, 450
SatI GCNGC 6 cut(s) 95, 238, 260, 263, 287, 506
Sau3AI GATC 2 cut(s) 208, 348
Sau96I GGNCC 4 cut(s) 136, 142, 270, 367
ScrFI CCNGG 4 cut(s) 57, 134, 140, 203
SduI GDGCHC 1 cut(s) 604
SgrAI CRCCGGYG 1 cut(s) 233
SinI GGWCC 3 cut(s) 136, 270, 367
Sse9I AATT 3 cut(s) 451, 458, 495
SsiI CCGC 8 cut(s) 22, 52, 75, 84, 237, 259, 415, 506
StyD4I CCNGG 4 cut(s) 55, 132, 138, 201
TaaI ACNGT 2 cut(s) 535, 599
TaiI ACGT 2 cut(s) 11, 339
TaqI TCGA 3 cut(s) 195, 351, 556
TasI AATT 3 cut(s) 451, 458, 495
TauI GCSGC 3 cut(s) 240, 262, 508
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 2 cut(s) 117, 450
Tru9I TTAA 2 cut(s) 117, 450
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 94, 262, 286
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 538
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 3 cut(s) 136, 270, 367
XapI RAATTY 2 cut(s) 458, 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 594
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.