Rh1AG213900

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004403
Physical Location & Seq
Reverse (-)
40867317 .. 40873479
6163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG213900.1

Sequence Viewer

Length: 582 bp
ATGGCCACGTGTCTCCCCTTCCGCTCCATCCCCTTCAAACCCAACACCTCCTCCTCCTCCTCCTCCTCCCGCCCCGCTAAAATCACCTGCTCCTCCGTCACCGCCCAATCCCGCCTCGCCAAGCAAGACCTCCTCGCCCTCATCGCCGACCAGGACCGCGGCCTCAAGACCCAGACCGACCCCACCAAACGCGCCTCCATCATCAAGGCCATCGACGCCCTGGCCGATCTCGGCAACGGTACCGTCACCACCGGCAGCGACCTCTCCGCCACGTGGCGGCTGCTGTGGACGACCGAGAAGGAGCAGCTCTTCATCATCCAGAACGCGTCCGTGTTCGGCACGCGCGCCGGCGACGTTTTGCAGGTCATCGATGTTGACCGGAAGGTCCTCAACAATGTCATCACTTTCCCTCCCGATGGTGTCTTCTTTGTTCGCTCCACTATCGAAGTCGCTTCGCCGCAGAGAGTGAATTTTAGGTTTACGAGTGCGGTTCTAAGAGGGAAGAGCTGGGAGTTTCCGTTGCCACCGTTCGGCCAGGGCTGGTTAGTGCTTTCTTTTGTCAAATTAGCTAATAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

193

Amino Acids

21.1

Weight (kDa)

9.85

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 40 - 169 3.2e-28 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
AasI GACNNNNNNGTC 1 cut(s) 383
Acc36I ACCTGC 2 cut(s) 95, 352
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 5 cut(s) 159, 192, 326, 343, 345
AcoI YGGCCR 3 cut(s) 3, 222, 532
AcsI RAATTY 1 cut(s) 469
AcvI CACGTG 2 cut(s) 9, 273
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 4 cut(s) 273, 276, 416, 530
AflIII ACRYGT 2 cut(s) 8, 324
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 3 cut(s) 150, 219, 534
AluBI AGCT 3 cut(s) 307, 507, 569
AluI AGCT 3 cut(s) 307, 507, 569
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 5 cut(s) 3, 160, 207, 222, 532
ApeKI GCWGC 3 cut(s) 255, 280, 304
ApoI RAATTY 1 cut(s) 469
Asp718I GGTACC 1 cut(s) 239
AspLEI GCGC 3 cut(s) 194, 345, 347
AspS9I GGNCC 2 cut(s) 154, 385
AsuHPI GGTGA 3 cut(s) 76, 91, 238
AvaII GGWCC 2 cut(s) 154, 385
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 239
BbrPI CACGTG 2 cut(s) 9, 273
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 3 cut(s) 267, 267, 316
BccI CCATC 4 cut(s) 35, 206, 218, 410
BciT130I CCWGG 3 cut(s) 152, 221, 536
BcoDI GTCTC 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 95, 352
BisI GCNGC 6 cut(s) 160, 256, 278, 281, 305, 458
BlsI GCNGC 6 cut(s) 161, 257, 279, 282, 306, 459
Bme1390I CCNGG 3 cut(s) 152, 221, 536
Bme18I GGWCC 2 cut(s) 154, 385
BmgT120I GGNCC 2 cut(s) 154, 385
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 152, 221, 536
BpiI GAAGAC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 369
BsaAI YACGTR 2 cut(s) 9, 273
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 157, 219, 535
BsaWI WCCGGW 1 cut(s) 378
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 394, 424, 503, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 276, 416, 530
Bse118I RCCGGY 2 cut(s) 251, 347
BseBI CCWGG 3 cut(s) 152, 221, 536
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 157, 219, 535
BseGI GGATG 2 cut(s) 27, 315
BseLI CCNNNNNNNGG 4 cut(s) 273, 276, 416, 530
BsePI GCGCGC 1 cut(s) 343
BseRI GAGGAG 8 cut(s) 40, 43, 46, 49, 52, 55, 82, 122
BseXI GCAGC 3 cut(s) 267, 267, 316
BseYI CCCAGC 1 cut(s) 507
Bsh1236I CGCG 5 cut(s) 159, 192, 326, 343, 345
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 5 cut(s) 5, 162, 209, 224, 534
BshNI GGYRCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 3 cut(s) 252, 348, 379
BslI CCNNNNNNNGG 4 cut(s) 273, 276, 416, 530
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 5 cut(s) 5, 162, 209, 224, 534
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 5 cut(s) 5, 162, 209, 224, 534
BspDI ATCGAT 1 cut(s) 369
BspFNI CGCG 5 cut(s) 159, 192, 326, 343, 345
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 2 cut(s) 95, 352
BspQI GCTCTTC 2 cut(s) 314, 497
BspT107I GGYRCC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 251, 347
BssAI RCCGGY 2 cut(s) 251, 347
BssECI CCNNGG 3 cut(s) 157, 219, 535
BssHII GCGCGC 1 cut(s) 343
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 152, 221, 536
Bst4CI ACNGT 3 cut(s) 239, 244, 528
Bst6I CTCTTC 2 cut(s) 314, 497
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 2 cut(s) 9, 273
BstC8I GCNNGC 3 cut(s) 341, 345, 349
BstDEI CTNAG 1 cut(s) 494
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 27, 315
BstFNI CGCG 5 cut(s) 159, 192, 326, 343, 345
BstHHI GCGC 3 cut(s) 194, 345, 347
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 226
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 143, 215
BstNI CCWGG 3 cut(s) 152, 221, 536
BstSCI CCNGG 3 cut(s) 150, 219, 534
BstUI CGCG 5 cut(s) 159, 192, 326, 343, 345
BstV1I GCAGC 3 cut(s) 267, 267, 316
BstV2I GAAGAC 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 5 cut(s) 5, 162, 209, 224, 534
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 27, 315
BveI ACCTGC 2 cut(s) 95, 352
Cac8I GCNNGC 3 cut(s) 341, 345, 349
CfoI GCGC 3 cut(s) 194, 345, 347
Cfr10I RCCGGY 2 cut(s) 251, 347
Cfr13I GGNCC 2 cut(s) 154, 385
Cfr42I CCGCGG 1 cut(s) 160
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 2 cut(s) 224, 315
Csp6I GTAC 1 cut(s) 240
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 494
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 3 cut(s) 3, 222, 532
Eam1104I CTCTTC 2 cut(s) 314, 497
EarI CTCTTC 2 cut(s) 314, 497
EciI GGCGGA 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 154, 385
Eco72I CACGTG 2 cut(s) 9, 273
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 150, 219, 534
FauI CCCGC 3 cut(s) 77, 82, 119
Fnu4HI GCNGC 6 cut(s) 160, 256, 278, 281, 305, 458
FokI GGATG 2 cut(s) 14, 302
Fsp4HI GCNGC 6 cut(s) 160, 256, 278, 281, 305, 458
GlaI GCGC 3 cut(s) 193, 344, 346
GluI GCNGC 6 cut(s) 160, 256, 278, 281, 305, 458
GsaI CCCAGC 1 cut(s) 511
HaeIII GGCC 5 cut(s) 5, 162, 209, 224, 534
HapII CCGG 3 cut(s) 252, 348, 379
HgaI GACGC 2 cut(s) 224, 315
HhaI GCGC 3 cut(s) 194, 345, 347
Hin1I GRCGYC 1 cut(s) 216
Hin6I GCGC 3 cut(s) 192, 343, 345
HinP1I GCGC 3 cut(s) 192, 343, 345
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HpaII CCGG 3 cut(s) 252, 348, 379
HphI GGTGA 3 cut(s) 76, 91, 238
Hpy166II GTNNAC 3 cut(s) 288, 376, 480
Hpy188III TCNNGA 3 cut(s) 166, 319, 413
Hpy8I GTNNAC 3 cut(s) 288, 376, 480
Hpy99I CGWCG 2 cut(s) 218, 356
HpyAV CCTTC 4 cut(s) 28, 43, 292, 376
HpyCH4III ACNGT 3 cut(s) 239, 244, 528
HpyCH4IV ACGT 3 cut(s) 8, 272, 354
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 215
HpyF3I CTNAG 1 cut(s) 494
HpySE526I ACGT 3 cut(s) 8, 272, 354
Hsp92I GRCGYC 1 cut(s) 216
HspAI GCGC 3 cut(s) 192, 343, 345
KpnI GGTACC 1 cut(s) 243
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 2 cut(s) 314, 497
LmnI GCTCC 4 cut(s) 29, 95, 301, 440
Lsp1109I GCAGC 3 cut(s) 267, 267, 316
MaeII ACGT 3 cut(s) 8, 272, 354
MaeIII GTNAC 2 cut(s) 97, 244
MalI GATC 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 301, 415, 514
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 469, 563
MluI ACGCGT 1 cut(s) 324
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 347
MroNI GCCGGC 1 cut(s) 347
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 3 cut(s) 252, 348, 379
MspR9I CCNGG 3 cut(s) 152, 221, 536
MvaI CCWGG 3 cut(s) 152, 221, 536
MvnI CGCG 5 cut(s) 159, 192, 326, 343, 345
MwoI GCNNNNNNNGC 2 cut(s) 143, 215
NaeI GCCGGC 1 cut(s) 349
NdeII GATC 1 cut(s) 226
NgoMIV GCCGGC 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 97, 244
PaqCI CACCTGC 1 cut(s) 95
PauI GCGCGC 1 cut(s) 343
PciSI GCTCTTC 2 cut(s) 314, 497
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 349
PkrI GCNGC 6 cut(s) 161, 257, 279, 282, 306, 459
PmaCI CACGTG 2 cut(s) 9, 273
PmlI CACGTG 2 cut(s) 9, 273
Ppu21I YACGTR 2 cut(s) 9, 273
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 3 cut(s) 150, 219, 534
PspCI CACGTG 2 cut(s) 9, 273
PspFI CCCAGC 1 cut(s) 507
PspGI CCWGG 3 cut(s) 150, 219, 534
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 2 cut(s) 154, 385
PspPPI RGGWCCY 1 cut(s) 385
PteI GCGCGC 1 cut(s) 343
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SacII CCGCGG 1 cut(s) 160
SapI GCTCTTC 2 cut(s) 314, 497
SatI GCNGC 6 cut(s) 160, 256, 278, 281, 305, 458
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 154, 385
ScrFI CCNGG 3 cut(s) 152, 221, 536
Sfr303I CCGCGG 1 cut(s) 160
SgrAI CRCCGGYG 1 cut(s) 347
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 2 cut(s) 154, 385
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 469, 563
StyD4I CCNGG 3 cut(s) 150, 219, 534
TaaI ACNGT 3 cut(s) 239, 244, 528
TaiI ACGT 3 cut(s) 11, 275, 357
TaqI TCGA 3 cut(s) 213, 369, 444
TaqII GACCGA 2 cut(s) 191, 308
TasI AATT 2 cut(s) 469, 563
TauI GCSGC 3 cut(s) 162, 280, 460
TseFI GTSAC 2 cut(s) 97, 244
TseI GCWGC 3 cut(s) 255, 280, 304
Tsp45I GTSAC 2 cut(s) 97, 244
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 3 cut(s) 85, 319, 507
VpaK11BI GGWCC 2 cut(s) 154, 385
XapI RAATTY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.