MD07G1111900.v1.1

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0004403
Physical Location & Seq
Reverse (-)
12979473 .. 12985458
5986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1111900.v1.1.491

Sequence Viewer

Length: 624 bp
ATGGCCACGTGCCTCCCGTTCCGCGCCATCCCCCTCAAACCCCACTTCACCAGCCCCGCTAAAATCACCTGCTCCGCCCCCACCGCCCAATCGCAGCTCGCCAAGCAACGCCTCCTCAACCTCATCGGCGACCAGGACCGCGGCCTCATGACCCAGAACAACCCCACAAAGCTCGCCTCCATCGTCAAGGCCATCGACGACCTGGCTGATCTTGGCCGAGACAGCGTCACCACCGGCGGCTCCCTCTCGGCCACATGGCGGCTGCTCTGGACCACGGAGAAGGAGCAGCTCTTCATCATCCAGAAAGCTTCCTTGTTCGGCACGCAAACCGGCGACGTCTTGCAGGTGATCGATGTCGGGCAAAGGGTGCTCAACAATGTCATCACTTTTCCTCCGGATGGGGTTTTCTTCGTCCGCTCTGATATCGCCATCGCTTCAAATCAGAGGGTTAATTTCAAATTTACAAGTGCAGTTCTAAGAGGGAAAAGCTGGGAAATTCCATTGCCGCCGTTCGGGCAGGGCTGGTTTGACACTGTGTACCTTGATGACGAGATTCGAGTTGTGAAGGATATCCGAGGAGACTATTTGGTTGTAGACCGTGCTCCCTACACTTGGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

208

Amino Acids

23.05

Weight (kDa)

8.56

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 34 - 198 6.4e-35 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 77, 334
AatII GACGTC 1 cut(s) 339
Acc36I ACCTGC 2 cut(s) 77, 334
AccBSI CCGCTC 1 cut(s) 417
AccI GTMKAC 1 cut(s) 594
AccII CGCG 2 cut(s) 24, 141
AccIII TCCGGA 1 cut(s) 394
AcoI YGGCCR 3 cut(s) 3, 214, 249
AcsI RAATTY 2 cut(s) 458, 495
AcvI CACGTG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 4 cut(s) 258, 398, 512, 612
AgsI TTSAA 2 cut(s) 438, 457
AjnI CCWGG 2 cut(s) 132, 201
AluBI AGCT 5 cut(s) 97, 172, 289, 308, 489
AluI AGCT 5 cut(s) 97, 172, 289, 308, 489
Alw21I GWGCWC 2 cut(s) 372, 604
Alw26I GTCTC 2 cut(s) 213, 573
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 5 cut(s) 3, 142, 189, 214, 249
ApeKI GCWGC 3 cut(s) 94, 262, 286
ApoI RAATTY 2 cut(s) 458, 495
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 136, 270
AsuHPI GGTGA 4 cut(s) 40, 58, 220, 358
AvaII GGWCC 2 cut(s) 136, 270
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 372, 604
BbvI GCAGC 3 cut(s) 106, 249, 298
BccI CCATC 5 cut(s) 35, 188, 200, 392, 437
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 2 cut(s) 134, 203
BcoDI GTCTC 2 cut(s) 213, 573
BfuAI ACCTGC 2 cut(s) 77, 334
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 7 cut(s) 95, 142, 238, 260, 263, 287, 506
BlsI GCNGC 7 cut(s) 96, 143, 239, 261, 264, 288, 507
Bme1390I CCNGG 2 cut(s) 134, 203
Bme18I GGWCC 2 cut(s) 136, 270
BmgT120I GGNCC 2 cut(s) 136, 270
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 134, 203
Bsa29I ATCGAT 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 139, 273, 574
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 398, 512, 612
Bse118I RCCGGY 2 cut(s) 233, 329
Bse3DI GCAATG 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 134, 203
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 139, 273, 574
BseGI GGATG 3 cut(s) 27, 297, 403
BseLI CCNNNNNNNGG 4 cut(s) 258, 398, 512, 612
BseMI GCAATG 1 cut(s) 500
BseRI GAGGAG 2 cut(s) 104, 591
BseXI GCAGC 3 cut(s) 106, 249, 298
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 2 cut(s) 24, 141
BshFI GGCC 5 cut(s) 5, 144, 191, 216, 251
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 372, 604
BsiSI CCGG 3 cut(s) 234, 330, 395
BslI CCNNNNNNNGG 4 cut(s) 258, 398, 512, 612
BsmAI GTCTC 2 cut(s) 213, 573
BsnI GGCC 5 cut(s) 5, 144, 191, 216, 251
Bsp1286I GDGCHC 2 cut(s) 372, 604
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 2 cut(s) 208, 348
BspANI GGCC 5 cut(s) 5, 144, 191, 216, 251
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 2 cut(s) 24, 141
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 2 cut(s) 77, 334
BspQI GCTCTTC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 500
BsrFI RCCGGY 2 cut(s) 233, 329
BssAI RCCGGY 2 cut(s) 233, 329
BssECI CCNNGG 3 cut(s) 139, 273, 574
BssMI GATC 2 cut(s) 208, 348
BssNI GRCGYC 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 134, 203
Bst4CI ACNGT 2 cut(s) 535, 599
Bst6I CTCTTC 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 99, 174, 323
BstDEI CTNAG 1 cut(s) 476
BstDSI CCRYGG 2 cut(s) 139, 273
BstF5I GGATG 3 cut(s) 27, 297, 403
BstFNI CGCG 2 cut(s) 24, 141
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 211, 351
BstMAI GTCTC 2 cut(s) 213, 573
BstMBI GATC 2 cut(s) 208, 348
BstMWI GCNNNNNNNGC 5 cut(s) 83, 103, 222, 367, 514
BstNI CCWGG 2 cut(s) 134, 203
BstSCI CCNGG 2 cut(s) 132, 201
BstUI CGCG 2 cut(s) 24, 141
BstV1I GCAGC 3 cut(s) 106, 249, 298
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 5 cut(s) 5, 144, 191, 216, 251
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 2 cut(s) 139, 273
BtgZI GCGATG 1 cut(s) 415
BtsCI GGATG 3 cut(s) 27, 297, 403
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 2 cut(s) 77, 334
Cac8I GCNNGC 3 cut(s) 99, 174, 323
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 2 cut(s) 233, 329
Cfr13I GGNCC 2 cut(s) 136, 270
Cfr42I CCGCGG 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 351
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 538
CviAII CATG 2 cut(s) 148, 255
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 1 cut(s) 476
DpnI GATC 2 cut(s) 210, 350
DpnII GATC 2 cut(s) 208, 348
EaeI YGGCCR 3 cut(s) 3, 214, 249
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 1 cut(s) 64
Eco32I GATATC 2 cut(s) 424, 571
Eco47I GGWCC 2 cut(s) 136, 270
Eco72I CACGTG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 132, 201
EcoRV GATATC 2 cut(s) 424, 571
FaeI CATG 2 cut(s) 151, 258
FaiI YATR 2 cut(s) 149, 256
FatI CATG 2 cut(s) 147, 254
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 7 cut(s) 95, 142, 238, 260, 263, 287, 506
FokI GGATG 3 cut(s) 14, 284, 410
Fsp4HI GCNGC 7 cut(s) 95, 142, 238, 260, 263, 287, 506
GlaI GCGC 1 cut(s) 25
GluI GCNGC 7 cut(s) 95, 142, 238, 260, 263, 287, 506
GsaI CCCAGC 1 cut(s) 493
HaeIII GGCC 5 cut(s) 5, 144, 191, 216, 251
HapII CCGG 3 cut(s) 234, 330, 395
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 151, 258
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 1 cut(s) 553
HpaII CCGG 3 cut(s) 234, 330, 395
HphI GGTGA 4 cut(s) 40, 58, 220, 358
Hpy166II GTNNAC 2 cut(s) 538, 595
Hpy188I TCNGA 3 cut(s) 421, 444, 575
Hpy188III TCNNGA 4 cut(s) 148, 268, 301, 395
Hpy8I GTNNAC 2 cut(s) 538, 595
Hpy99I CGWCG 2 cut(s) 200, 338
HpyAV CCTTC 2 cut(s) 274, 559
HpyCH4III ACNGT 2 cut(s) 535, 599
HpyCH4IV ACGT 2 cut(s) 8, 336
HpyCH4V TGCA 2 cut(s) 343, 470
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 103, 222, 367, 514
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 8, 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 151, 258
HspAI GCGC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 2 cut(s) 208, 348
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 4 cut(s) 77, 245, 283, 607
Lsp1109I GCAGC 3 cut(s) 106, 249, 298
MaeII ACGT 2 cut(s) 8, 336
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 210, 350
MbiI CCGCTC 1 cut(s) 417
MboI GATC 2 cut(s) 208, 348
MboII GAAGA 2 cut(s) 283, 400
MhlI GDGCHC 2 cut(s) 372, 604
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 451, 458, 495
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 394
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 3 cut(s) 234, 330, 395
MspR9I CCNGG 2 cut(s) 134, 203
MvaI CCWGG 2 cut(s) 134, 203
MvnI CGCG 2 cut(s) 24, 141
MwoI GCNNNNNNNGC 5 cut(s) 83, 103, 222, 367, 514
NdeII GATC 2 cut(s) 208, 348
NlaIII CATG 2 cut(s) 151, 258
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 2 cut(s) 227, 242
NmuCI GTSAC 1 cut(s) 226
PagI TCATGA 1 cut(s) 147
PaqCI CACCTGC 2 cut(s) 77, 334
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 180
PfeI GAWTC 1 cut(s) 553
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 7 cut(s) 96, 143, 239, 261, 264, 288, 507
PmaCI CACGTG 1 cut(s) 9
PmlI CACGTG 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 132, 201
PspCI CACGTG 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 2 cut(s) 132, 201
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 2 cut(s) 136, 270
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SacII CCGCGG 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 7 cut(s) 95, 142, 238, 260, 263, 287, 506
Sau3AI GATC 2 cut(s) 208, 348
Sau96I GGNCC 2 cut(s) 136, 270
ScrFI CCNGG 2 cut(s) 134, 203
SduI GDGCHC 2 cut(s) 372, 604
Sfr303I CCGCGG 1 cut(s) 142
SgrAI CRCCGGYG 1 cut(s) 233
SgrBI CCGCGG 1 cut(s) 142
SinI GGWCC 2 cut(s) 136, 270
Sse9I AATT 3 cut(s) 451, 458, 495
StyD4I CCNGG 2 cut(s) 132, 201
TaaI ACNGT 2 cut(s) 535, 599
TaiI ACGT 2 cut(s) 11, 339
TaqI TCGA 3 cut(s) 195, 351, 556
TasI AATT 3 cut(s) 451, 458, 495
TauI GCSGC 4 cut(s) 144, 240, 262, 508
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 94, 262, 286
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 538
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 136, 270
XapI RAATTY 2 cut(s) 458, 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 594
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.