FvH4_7g10720

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004403
Physical Location & Seq
Reverse (-)
10053381 .. 10057550
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10720.t3

Sequence Viewer

Length: 636 bp
ATGGCCACGTGTCTCCCCTTCCGCGCCATCCCCTCCAAACCCTCCTCCTCCTCCTCTTCTTCACGCGCCGCTAAAATCACCTGCTCCTCCGTCACAGCCCAATCCCGCCTCGCCAAGCAAGACCTCCTCGCCCTCATCGCCGACCAGGACCGCGGCCTCAAGACGCAGGCTGACCCAGCCAGGCGCGCCTCCATCATCACCGCCATCGACGCCTTGGCCGATCTCGGCAAGGGCACCGTCACCACCGGTAGCGACCTCTCCGCCACGTGGCGGCTGCTGTGGACGACGGAGAAGGAGCAGCTGTTTATCATCCAGAACGCGTCCGTGTTCGGCACGCGCGCCGGCGATGTTCTGCAGGTCATCGATGTTGACCGGAAGGTCCTCAACAACGTCATCACTTTCCCTCCCGACGGTGTTTTCTTCGTCCGCTCCAGTATTGAAGTCGCTTCGCCGCAGAGAGTGAATTTCAGGTTTACGAGTGCGGTTTTACGAGGGAAGAGCTGGGAGTTTCCGTTGCCGCCGTTCGGGCAGGGGTGGTTTGAAACTGTATACCTTGATGATGAGATTCGGGTTGTGAAGGATATCAGAGAAGACTATTTGGTTGTAGACCGTGCTCCCTATGCTTGGACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

212

Amino Acids

23.31

Weight (kDa)

7.73

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 38 - 166 2.8e-28 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
AasI GACNNNNNNGTC 1 cut(s) 377
Acc36I ACCTGC 2 cut(s) 89, 346
AccB1I GGYRCC 1 cut(s) 233
AccBSI CCGCTC 1 cut(s) 429
AccI GTMKAC 2 cut(s) 549, 606
AccII CGCG 7 cut(s) 24, 66, 153, 186, 320, 337, 339
AcoI YGGCCR 2 cut(s) 3, 216
AcsI RAATTY 1 cut(s) 463
AcvI CACGTG 2 cut(s) 9, 267
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 5 cut(s) 267, 270, 410, 524, 624
AflIII ACRYGT 2 cut(s) 8, 318
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 2 cut(s) 440, 542
AjnI CCWGG 2 cut(s) 144, 179
AluBI AGCT 2 cut(s) 301, 501
AluI AGCT 2 cut(s) 301, 501
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 3 cut(s) 3, 154, 216
ApeKI GCWGC 2 cut(s) 274, 298
ApoI RAATTY 1 cut(s) 463
AscI GGCGCGCC 1 cut(s) 184
AsiGI ACCGGT 1 cut(s) 245
AspLEI GCGC 6 cut(s) 26, 68, 186, 188, 339, 341
AspS9I GGNCC 2 cut(s) 148, 379
AsuHPI GGTGA 3 cut(s) 70, 190, 232
AvaII GGWCC 2 cut(s) 148, 379
BaeGI GKGCMC 1 cut(s) 236
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 233
BbrPI CACGTG 2 cut(s) 9, 267
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 261, 310
BccI CCATC 3 cut(s) 35, 200, 212
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 146, 181
BcoDI GTCTC 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 353
BfuAI ACCTGC 2 cut(s) 89, 346
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 7 cut(s) 69, 154, 272, 275, 299, 452, 518
BlsI GCNGC 7 cut(s) 70, 155, 273, 276, 300, 453, 519
Bme1390I CCNGG 2 cut(s) 146, 181
Bme18I GGWCC 2 cut(s) 148, 379
BmgT120I GGNCC 2 cut(s) 148, 379
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 146, 181
BpiI GAAGAC 1 cut(s) 597
BpmI CTGGAG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 2 cut(s) 9, 267
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 151, 213
BsaWI WCCGGW 2 cut(s) 245, 372
BsaXI ACNNNNNCTCC 6 cut(s) 287, 317, 388, 418, 497, 527
Bsc4I CCNNNNNNNGG 5 cut(s) 267, 270, 410, 524, 624
Bse118I RCCGGY 2 cut(s) 245, 341
Bse1I ACTGG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 146, 181
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 151, 213
BseGI GGATG 2 cut(s) 27, 309
BseLI CCNNNNNNNGG 5 cut(s) 267, 270, 410, 524, 624
BseNI ACTGG 1 cut(s) 432
BsePI GCGCGC 2 cut(s) 184, 337
BseRI GAGGAG 6 cut(s) 34, 37, 40, 43, 76, 116
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 2 cut(s) 261, 310
BseYI CCCAGC 2 cut(s) 175, 501
Bsh1236I CGCG 7 cut(s) 24, 66, 153, 186, 320, 337, 339
BshFI GGCC 3 cut(s) 5, 156, 218
BshNI GGYRCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 3 cut(s) 246, 342, 373
BslI CCNNNNNNNGG 5 cut(s) 267, 270, 410, 524, 624
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 3 cut(s) 5, 156, 218
Bsp1286I GDGCHC 2 cut(s) 236, 616
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 3 cut(s) 5, 156, 218
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 7 cut(s) 24, 66, 153, 186, 320, 337, 339
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 2 cut(s) 89, 346
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 245, 341
BsrI ACTGG 1 cut(s) 432
BssAI RCCGGY 2 cut(s) 245, 341
BssECI CCNNGG 2 cut(s) 151, 213
BssHII GCGCGC 2 cut(s) 184, 337
BssMI GATC 1 cut(s) 220
BssNAI GTATAC 1 cut(s) 550
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 550
Bst2UI CCWGG 2 cut(s) 146, 181
Bst4CI ACNGT 4 cut(s) 238, 413, 547, 611
Bst6I CTCTTC 2 cut(s) 61, 491
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 2 cut(s) 9, 267
BstC8I GCNNGC 5 cut(s) 168, 186, 335, 339, 343
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 2 cut(s) 27, 309
BstFNI CGCG 7 cut(s) 24, 66, 153, 186, 320, 337, 339
BstHHI GCGC 6 cut(s) 26, 68, 186, 188, 339, 341
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 6 cut(s) 137, 176, 185, 209, 526, 620
BstNI CCWGG 2 cut(s) 146, 181
BstSCI CCNGG 2 cut(s) 144, 179
BstSFI CTRYAG 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 7 cut(s) 24, 66, 153, 186, 320, 337, 339
BstV1I GCAGC 2 cut(s) 261, 310
BstV2I GAAGAC 1 cut(s) 597
BstZ17I GTATAC 1 cut(s) 550
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 5, 156, 218
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 151
BtgZI GCGATG 2 cut(s) 121, 360
BtsCI GGATG 2 cut(s) 27, 309
BveI ACCTGC 2 cut(s) 89, 346
Cac8I GCNNGC 5 cut(s) 168, 186, 335, 339, 343
CfoI GCGC 6 cut(s) 26, 68, 186, 188, 339, 341
Cfr10I RCCGGY 2 cut(s) 245, 341
Cfr13I GGNCC 2 cut(s) 148, 379
Cfr42I CCGCGG 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 3 cut(s) 172, 218, 309
CspAI ACCGGT 1 cut(s) 245
CviJI RGCY 9 cut(s) 5, 98, 156, 170, 179, 218, 274, 301, 501
CviKI_1 RGCY 9 cut(s) 5, 98, 156, 170, 179, 218, 274, 301, 501
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 3, 216
Eam1104I CTCTTC 2 cut(s) 61, 491
EarI CTCTTC 2 cut(s) 61, 491
EciI GGCGGA 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 213
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 148, 379
Eco72I CACGTG 2 cut(s) 9, 267
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 144, 179
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaiI YATR 2 cut(s) 550, 621
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 2 cut(s) 549, 606
Fnu4HI GCNGC 7 cut(s) 69, 154, 272, 275, 299, 452, 518
FokI GGATG 2 cut(s) 14, 296
Fsp4HI GCNGC 7 cut(s) 69, 154, 272, 275, 299, 452, 518
GlaI GCGC 6 cut(s) 25, 67, 185, 187, 338, 340
GluI GCNGC 7 cut(s) 69, 154, 272, 275, 299, 452, 518
GsaI CCCAGC 2 cut(s) 179, 505
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 3 cut(s) 5, 156, 218
HapII CCGG 3 cut(s) 246, 342, 373
HgaI GACGC 3 cut(s) 172, 218, 309
HhaI GCGC 6 cut(s) 26, 68, 186, 188, 339, 341
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 6 cut(s) 24, 66, 184, 186, 337, 339
HinP1I GCGC 6 cut(s) 24, 66, 184, 186, 337, 339
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 1 cut(s) 565
HpaII CCGG 3 cut(s) 246, 342, 373
HphI GGTGA 3 cut(s) 70, 190, 232
Hpy166II GTNNAC 5 cut(s) 282, 370, 474, 550, 607
Hpy188I TCNGA 1 cut(s) 587
Hpy188III TCNNGA 3 cut(s) 160, 313, 407
Hpy8I GTNNAC 5 cut(s) 282, 370, 474, 550, 607
Hpy99I CGWCG 3 cut(s) 212, 289, 413
HpyAV CCTTC 4 cut(s) 28, 286, 370, 571
HpyCH4III ACNGT 4 cut(s) 238, 413, 547, 611
HpyCH4IV ACGT 3 cut(s) 8, 266, 390
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 176, 185, 209, 526, 620
HpySE526I ACGT 3 cut(s) 8, 266, 390
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 6 cut(s) 24, 66, 184, 186, 337, 339
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
KspI CCGCGG 1 cut(s) 154
Kzo9I GATC 1 cut(s) 220
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 4 cut(s) 89, 295, 434, 619
Lsp1109I GCAGC 2 cut(s) 261, 310
MaeII ACGT 3 cut(s) 8, 266, 390
MaeIII GTNAC 2 cut(s) 91, 238
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 429
MboI GATC 1 cut(s) 220
MboII GAAGA 5 cut(s) 48, 51, 412, 508, 602
MhlI GDGCHC 2 cut(s) 236, 616
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 463
MluI ACGCGT 1 cut(s) 318
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 153, 301
MspI CCGG 3 cut(s) 246, 342, 373
MspR9I CCNGG 2 cut(s) 146, 181
MvaI CCWGG 2 cut(s) 146, 181
MvnI CGCG 7 cut(s) 24, 66, 153, 186, 320, 337, 339
MwoI GCNNNNNNNGC 6 cut(s) 137, 176, 185, 209, 526, 620
NaeI GCCGGC 1 cut(s) 343
NdeII GATC 1 cut(s) 220
NgoMIV GCCGGC 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 235
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 91, 238
PalAI GGCGCGCC 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 89
PauI GCGCGC 2 cut(s) 184, 337
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 7 cut(s) 70, 155, 273, 276, 300, 453, 519
PmaCI CACGTG 2 cut(s) 9, 267
PmlI CACGTG 2 cut(s) 9, 267
Ppu21I YACGTR 2 cut(s) 9, 267
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 144, 179
PspCI CACGTG 2 cut(s) 9, 267
PspFI CCCAGC 2 cut(s) 175, 501
PspGI CCWGG 2 cut(s) 144, 179
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 148, 379
PspPPI RGGWCCY 1 cut(s) 379
PstI CTGCAG 1 cut(s) 357
PteI GCGCGC 2 cut(s) 184, 337
PvuII CAGCTG 1 cut(s) 301
SacII CCGCGG 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 491
SatI GCNGC 7 cut(s) 69, 154, 272, 275, 299, 452, 518
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 148, 379
ScrFI CCNGG 2 cut(s) 146, 181
SduI GDGCHC 2 cut(s) 236, 616
SfcI CTRYAG 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 341
SgrBI CCGCGG 1 cut(s) 154
SgsI GGCGCGCC 1 cut(s) 184
SinI GGWCC 2 cut(s) 148, 379
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 144, 179
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 4 cut(s) 238, 413, 547, 611
TaiI ACGT 3 cut(s) 11, 269, 393
TaqI TCGA 2 cut(s) 207, 363
TasI AATT 1 cut(s) 463
TauI GCSGC 5 cut(s) 71, 156, 274, 454, 520
TfiI GAWTC 1 cut(s) 565
TseFI GTSAC 2 cut(s) 91, 238
TseI GCWGC 2 cut(s) 274, 298
Tsp45I GTSAC 2 cut(s) 91, 238
TspGWI ACGGA 4 cut(s) 79, 302, 313, 501
VpaK11BI GGWCC 2 cut(s) 148, 379
XapI RAATTY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmiI GTMKAC 2 cut(s) 549, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.