Rw1G018120

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004403
Physical Location & Seq
Reverse (-)
39867956 .. 39871481
3526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018120.1

Sequence Viewer

Length: 639 bp
ATGGCCACGTGTCTCCCCTTCCGCTCCATCCCCTTCAAACCCAACACCTCCTCCTCCTCCTCCTCCCGCCCCGCTAAAATCACCTGCTCCTCCGTCACCGCCCAATCCCGCCTCGCCAAGCAAGACCTCCTCGCCCTCATCGCCGACCAGGACCGCGGCCTCAAGACCCAGACCGACCCCACCAAACGCGCCTCCATCATCAAGGCCATCGACGCCCTGGCCGATCTCGGCAACGGTACCGTCACCACCGGCAGCGACCTCTCCGCCACGTGGCGGCTGCTGTGGACGACCGAGAAGGAGCAGCTCTTCATCATCCAGAACGCGTCCGTGTTCGGCACGCGCGCCGGCGACGTTTTGCAGGTCATCGATGTTGACCGGAAGGTCCTCAACAATGTCATCACTTTCCCTCCCGATGGTGTCTTCTTTGTTCGCTCCACCATCGAAGTCGCTTCGCCGCAGAGAGTGAATTTTAGGTTTACGAGTGCGGTTCTAAGAGGGAAGAGCTGGGAGTTTCCGTTGCCACCGTTCGGCCAGGGCTGGTTTGAAACTGTATACCTTGATGACGAGATTCGGGTTGTGAAGGATATCAGAGAAGACTATTTGGTTGTAGACCGTGCTCCCTATGCTTGGACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

212

Amino Acids

23.6

Weight (kDa)

7.72

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 39 - 203 2.4e-35 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 2 cut(s) 92, 349
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 2 cut(s) 552, 609
AccII CGCG 5 cut(s) 156, 189, 323, 340, 342
AcoI YGGCCR 3 cut(s) 3, 219, 529
AcsI RAATTY 1 cut(s) 466
AcvI CACGTG 2 cut(s) 9, 270
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 5 cut(s) 270, 273, 413, 527, 627
AflIII ACRYGT 2 cut(s) 8, 321
AgsI TTSAA 2 cut(s) 37, 545
AjnI CCWGG 3 cut(s) 147, 216, 531
AluBI AGCT 2 cut(s) 304, 504
AluI AGCT 2 cut(s) 304, 504
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 5 cut(s) 3, 157, 204, 219, 529
ApeKI GCWGC 3 cut(s) 252, 277, 301
ApoI RAATTY 1 cut(s) 466
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 3 cut(s) 191, 342, 344
AspS9I GGNCC 2 cut(s) 151, 382
AsuHPI GGTGA 3 cut(s) 73, 88, 235
AvaII GGWCC 2 cut(s) 151, 382
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 236
BbrPI CACGTG 2 cut(s) 9, 270
BbsI GAAGAC 2 cut(s) 412, 600
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 3 cut(s) 264, 264, 313
BccI CCATC 5 cut(s) 35, 203, 215, 407, 446
BciT130I CCWGG 3 cut(s) 149, 218, 533
BcoDI GTCTC 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 92, 349
BisI GCNGC 6 cut(s) 157, 253, 275, 278, 302, 455
BlsI GCNGC 6 cut(s) 158, 254, 276, 279, 303, 456
Bme1390I CCNGG 3 cut(s) 149, 218, 533
Bme18I GGWCC 2 cut(s) 151, 382
BmgT120I GGNCC 2 cut(s) 151, 382
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 3 cut(s) 149, 218, 533
BpiI GAAGAC 2 cut(s) 412, 600
BpuEI CTTGAG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 366
BsaAI YACGTR 2 cut(s) 9, 270
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 154, 216, 532
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 391, 421, 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 270, 273, 413, 527, 627
Bse118I RCCGGY 2 cut(s) 248, 344
BseBI CCWGG 3 cut(s) 149, 218, 533
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 154, 216, 532
BseGI GGATG 2 cut(s) 27, 312
BseLI CCNNNNNNNGG 5 cut(s) 270, 273, 413, 527, 627
BsePI GCGCGC 1 cut(s) 340
BseRI GAGGAG 7 cut(s) 40, 43, 46, 49, 52, 79, 119
BseXI GCAGC 3 cut(s) 264, 264, 313
BseYI CCCAGC 1 cut(s) 504
Bsh1236I CGCG 5 cut(s) 156, 189, 323, 340, 342
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 5 cut(s) 5, 159, 206, 221, 531
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 3 cut(s) 249, 345, 376
BslI CCNNNNNNNGG 5 cut(s) 270, 273, 413, 527, 627
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 5 cut(s) 5, 159, 206, 221, 531
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 5 cut(s) 5, 159, 206, 221, 531
BspDI ATCGAT 1 cut(s) 366
BspFNI CGCG 5 cut(s) 156, 189, 323, 340, 342
BspLI GGNNCC 1 cut(s) 238
BspMI ACCTGC 2 cut(s) 92, 349
BspQI GCTCTTC 2 cut(s) 311, 494
BspT107I GGYRCC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 248, 344
BssAI RCCGGY 2 cut(s) 248, 344
BssECI CCNNGG 3 cut(s) 154, 216, 532
BssHII GCGCGC 1 cut(s) 340
BssMI GATC 1 cut(s) 223
BssNAI GTATAC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 553
Bst2UI CCWGG 3 cut(s) 149, 218, 533
Bst4CI ACNGT 5 cut(s) 236, 241, 525, 550, 614
Bst6I CTCTTC 2 cut(s) 311, 494
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 2 cut(s) 9, 270
BstC8I GCNNGC 3 cut(s) 338, 342, 346
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 2 cut(s) 27, 312
BstFNI CGCG 5 cut(s) 156, 189, 323, 340, 342
BstHHI GCGC 3 cut(s) 191, 342, 344
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 3 cut(s) 140, 212, 623
BstNI CCWGG 3 cut(s) 149, 218, 533
BstSCI CCNGG 3 cut(s) 147, 216, 531
BstUI CGCG 5 cut(s) 156, 189, 323, 340, 342
BstV1I GCAGC 3 cut(s) 264, 264, 313
BstV2I GAAGAC 2 cut(s) 412, 600
BstZ17I GTATAC 1 cut(s) 553
Bsu15I ATCGAT 1 cut(s) 366
BsuRI GGCC 5 cut(s) 5, 159, 206, 221, 531
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 27, 312
BveI ACCTGC 2 cut(s) 92, 349
Cac8I GCNNGC 3 cut(s) 338, 342, 346
CfoI GCGC 3 cut(s) 191, 342, 344
Cfr10I RCCGGY 2 cut(s) 248, 344
Cfr13I GGNCC 2 cut(s) 151, 382
Cfr42I CCGCGG 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 2 cut(s) 221, 312
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 9 cut(s) 5, 159, 206, 221, 277, 304, 504, 531, 537
CviKI_1 RGCY 9 cut(s) 5, 159, 206, 221, 277, 304, 504, 531, 537
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 491
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 3 cut(s) 3, 219, 529
Eam1104I CTCTTC 2 cut(s) 311, 494
EarI CTCTTC 2 cut(s) 311, 494
EciI GGCGGA 1 cut(s) 253
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 151, 382
Eco72I CACGTG 2 cut(s) 9, 270
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 147, 216, 531
EcoRV GATATC 1 cut(s) 586
FaiI YATR 2 cut(s) 553, 624
FauI CCCGC 3 cut(s) 74, 79, 116
FblI GTMKAC 2 cut(s) 552, 609
Fnu4HI GCNGC 6 cut(s) 157, 253, 275, 278, 302, 455
FokI GGATG 2 cut(s) 14, 299
Fsp4HI GCNGC 6 cut(s) 157, 253, 275, 278, 302, 455
GlaI GCGC 3 cut(s) 190, 341, 343
GluI GCNGC 6 cut(s) 157, 253, 275, 278, 302, 455
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 5 cut(s) 5, 159, 206, 221, 531
HapII CCGG 3 cut(s) 249, 345, 376
HgaI GACGC 2 cut(s) 221, 312
HhaI GCGC 3 cut(s) 191, 342, 344
Hin1I GRCGYC 1 cut(s) 213
Hin6I GCGC 3 cut(s) 189, 340, 342
HinP1I GCGC 3 cut(s) 189, 340, 342
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 1 cut(s) 568
HpaII CCGG 3 cut(s) 249, 345, 376
HphI GGTGA 3 cut(s) 73, 88, 235
Hpy166II GTNNAC 5 cut(s) 285, 373, 477, 553, 610
Hpy188I TCNGA 1 cut(s) 590
Hpy188III TCNNGA 3 cut(s) 163, 316, 410
Hpy8I GTNNAC 5 cut(s) 285, 373, 477, 553, 610
Hpy99I CGWCG 2 cut(s) 215, 353
HpyAV CCTTC 5 cut(s) 28, 43, 289, 373, 574
HpyCH4III ACNGT 5 cut(s) 236, 241, 525, 550, 614
HpyCH4IV ACGT 3 cut(s) 8, 269, 351
HpyCH4V TGCA 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 212, 623
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 3 cut(s) 8, 269, 351
Hsp92I GRCGYC 1 cut(s) 213
HspAI GCGC 3 cut(s) 189, 340, 342
KpnI GGTACC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 2 cut(s) 311, 494
LmnI GCTCC 5 cut(s) 29, 92, 298, 437, 622
Lsp1109I GCAGC 3 cut(s) 264, 264, 313
MaeII ACGT 3 cut(s) 8, 269, 351
MaeIII GTNAC 2 cut(s) 94, 241
MalI GATC 1 cut(s) 225
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 223
MboII GAAGA 4 cut(s) 298, 412, 511, 605
MhlI GDGCHC 1 cut(s) 619
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 466
MluI ACGCGT 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 344
MroNI GCCGGC 1 cut(s) 344
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 249, 345, 376
MspR9I CCNGG 3 cut(s) 149, 218, 533
MvaI CCWGG 3 cut(s) 149, 218, 533
MvnI CGCG 5 cut(s) 156, 189, 323, 340, 342
MwoI GCNNNNNNNGC 3 cut(s) 140, 212, 623
NaeI GCCGGC 1 cut(s) 346
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 238
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 94, 241
PaqCI CACCTGC 1 cut(s) 92
PauI GCGCGC 1 cut(s) 340
PciSI GCTCTTC 2 cut(s) 311, 494
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 568
PkrI GCNGC 6 cut(s) 158, 254, 276, 279, 303, 456
PmaCI CACGTG 2 cut(s) 9, 270
PmlI CACGTG 2 cut(s) 9, 270
Ppu21I YACGTR 2 cut(s) 9, 270
PpuMI RGGWCCY 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 3 cut(s) 147, 216, 531
PspCI CACGTG 2 cut(s) 9, 270
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 3 cut(s) 147, 216, 531
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 151, 382
PspPPI RGGWCCY 1 cut(s) 382
PteI GCGCGC 1 cut(s) 340
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SacII CCGCGG 1 cut(s) 157
SapI GCTCTTC 2 cut(s) 311, 494
SatI GCNGC 6 cut(s) 157, 253, 275, 278, 302, 455
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 151, 382
ScrFI CCNGG 3 cut(s) 149, 218, 533
SduI GDGCHC 1 cut(s) 619
Sfr303I CCGCGG 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 2 cut(s) 151, 382
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 466
StyD4I CCNGG 3 cut(s) 147, 216, 531
TaaI ACNGT 5 cut(s) 236, 241, 525, 550, 614
TaiI ACGT 3 cut(s) 11, 272, 354
TaqI TCGA 3 cut(s) 210, 366, 441
TaqII GACCGA 2 cut(s) 188, 305
TasI AATT 1 cut(s) 466
TauI GCSGC 3 cut(s) 159, 277, 457
TfiI GAWTC 1 cut(s) 568
TseFI GTSAC 2 cut(s) 94, 241
TseI GCWGC 3 cut(s) 252, 277, 301
Tsp45I GTSAC 2 cut(s) 94, 241
TspDTI ATGAA 1 cut(s) 298
TspGWI ACGGA 3 cut(s) 82, 316, 504
VpaK11BI GGWCC 2 cut(s) 151, 382
XapI RAATTY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 2 cut(s) 552, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.