Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004403

Physical Location & Seq

Genomic Coordinates Forward (+)

27523089 .. 27523391

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTCCATTACGCTTACCACGCCGTCAAGAAGTCCATTGAGGCATATATCACTCGCACCGACGGGTATGTCATTGAGGTACCTTTGCCATTTCCTTTGAATTCTAATGATGAGATTGTAACCGAGTTTAAGGAAGCTTTGGAAAAAGGGAAGGCGAATGGGACGAGGGTTAGGCTAGTTGTGATTGATCATATTACTATTGGCCTTGTGTGGTTATACCTGTTAAGGAGTTGGTTAAGATTTGTAGGGAGGAGGGGGTTGATTAGGTTTTCATCGATGCAGCTCACAACATTGGGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

100

Amino Acids

11.52

Weight (kDa)

9.63

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00030
fragaria_vesca	FvH4_7g10720 FvH4_7g10720 FvH4_7g10720
malus_domestica	MD07G1111900.v1.1
prunus_persica	Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1
pyrus_communis	pycom07g09700
rosa_chinensis	RchiOBHm_Chr1g0348671
rosa_laevigata	RLG00000028632
rosa_multiflora	Rmu_co8029388.1_g000001 Rmu_sc0019657.1_g000002 Rmu_sc0028436.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306850
rosa_rugosa	Rorug01G0196000 Rorug01G0196000 Rorug01G0196000 Rorug01G0196100 Rorug01G0196200 Rorug01G0196300 Rorug01G0196400 Rorug01G0196500 Rorug01G0196600
rosa_samantha	Rh1AG213900 Rh1BG180400 Rh1CG198600 Rh1DG210400
rosa_wichuraiana	Rw1G018120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	137, 283
AluI	AGCT	2 cut(s)	137, 283
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	100
Asp718I	GGTACC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	8
BclI	TGATCA	1 cut(s)	187
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	81
BmsI	GCATC	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	275
BseCI	ATCGAT	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	79
BssMI	GATC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	4 cut(s)	137, 175, 204, 283
CviKI_1	RGCY	4 cut(s)	137, 175, 204, 283
CviQI	GTAC	1 cut(s)	80
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	100
FaiI	YATR	7 cut(s)	46, 48, 69, 192, 217, 299, 301
FaqI	GGGAC	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	5 cut(s)	34, 70, 159, 243, 246
MseI	TTAA	3 cut(s)	129, 224, 236
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	129, 224, 236
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	187
SetI	ASST	6 cut(s)	81, 85, 139, 222, 269, 285
SfaNI	GCATC	1 cut(s)	267
SgeI	CNNG	9 cut(s)	32, 40, 66, 76, 136, 177, 188, 218, 232
Sse9I	AATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	176
TaqI	TCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	100
Tru1I	TTAA	3 cut(s)	129, 224, 236
Tru9I	TTAA	3 cut(s)	129, 224, 236
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	261
XapI	RAATTY	1 cut(s)	100
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.