Rorug01G0196100

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004403
Physical Location & Seq
Reverse (-)
27502211 .. 27504783
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0196100.1

Sequence Viewer

Length: 1329 bp
ATGGTTCAAGTTGTAAAATATAGTTTAACTGGGAATATTAAAATCATTCGTCTCCATGATCTTATGCTAGAATTGTGCCGTAAAAAAGCAAAACGTGATAACTTTCTCCATGTTGTCAATTCTTCTGAAGCCAAAGAGACCCAGGCAGCATCATTCAACAAAGTTCGAAGACTTGCGGTCCGTTTAGACGGAATTGGTCATGAGTTAGCTCCGCCAAGTGATGAAAAACATGTTTCCCTAAGGTCTCTATTATTCTTTGTCCGAGGACACTATTACTCAGACATGTATAGAAAATTAATGCGGTCACTATGCAAGGATTTCAAATTGCTTAGAGTTTTGAAATTTGAAGATATGAAGGCAGAACCAGACATAGAGTTGCCGAGTAATATTGGGAATTTAGTCCACTTGAGGTTTTTAAGTCTGAAGAACAGTGAAATAAAACGGTTACCATCATCTGCAGCTAATTTGGTATGTCTGGAAACTCTAGATTTACGTTGTGTGGAATGGGTTAGCGTTAAAATCCCAAATGTGTTTCGGAAGATGGCGAAGTTGAGACATTTATATTTACCCTTGAATCACAGAGTAACAGTAACTGAGAAGCTGTCATTGGCCACTCTTCACAATTTGCAGACGTTAGTCAACATTTCAAGTCAAGATTGTGATTTGAAGGATCTTATTGTGCTAACCAATCTAAGAAAACTAGTCCTGCATGCATGGGGACCAACCGAGTTCGAAACTCTGGAGAAAATCATGAAAGATGGAGGCATCACATTTCGCCATCTTCGGTCTCTATCTTTGGTGACAGTCAACGGCAATGGAGACATACCAACACATATAGTATTGGGCTGTCCTGATCTTTTGAAGCTGCAACTGTATGGAAGAATCAAAGAGTTCCCAGAAGATCACCAATTCTCAAACCTCACCAAGTTAACGCTGGAGGAAACTGATCTCCAGGACTGCCATATAGAAAGACTAGAGAAGCTAGCTAACTTAAAAGTACTTTCCCTTGGAATGGGTGCTTTCAAGTCAGAAACTATGGTTTTCTCCGAAGGAGGCTTTCGTCAACTTCAGTTTCTTTCCCTGCTTGGCTTATGTGAATTAAAGGAGTGGACAGTGGAGAGAGGAGCCATGCCAAGTCTCTACAGTTTGCACATCGGATATTGCTGGGGGTTGAGGGCAGTTCCAGATGGACTTCAACATATTTCTACCCTCAAGGAGTTAACCATCAAACGGATGTATCGTGAATTCTGTAATAGACTTGGAGAAGGAGGAGTAGATTTCGATACAATCAGTCATGTACCTTCTGTTACAATAACAAACATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

442

Amino Acids

50.55

Weight (kDa)

9.09

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 98 - 411 4.6e-35 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 176, 212, 301
AclWI GGATC 1 cut(s) 678
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 3 cut(s) 341, 394, 1244
AcuI CTGAAG 3 cut(s) 147, 443, 1052
AfaI GTAC 2 cut(s) 999, 1299
AfiI CCNNNNNNNGG 2 cut(s) 1012, 1230
AflIII ACRYGT 2 cut(s) 229, 282
AhdI GACNNNNNGTC 1 cut(s) 176
AhlI ACTAGT 1 cut(s) 700
AjnI CCWGG 2 cut(s) 141, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AluBI AGCT 6 cut(s) 209, 461, 601, 865, 982, 986
AluI AGCT 6 cut(s) 209, 461, 601, 865, 982, 986
Alw26I GTCTC 7 cut(s) 56, 131, 249, 547, 792, 813, 1142
AlwI GGATC 1 cut(s) 678
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 3 cut(s) 146, 458, 865
ApoI RAATTY 3 cut(s) 341, 394, 1244
AseI ATTAAT 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 178, 719
AsuHPI GGTGA 3 cut(s) 811, 896, 913
AsuII TTCGAA 2 cut(s) 166, 732
AsuNHI GCTAGC 1 cut(s) 982
AvaII GGWCC 2 cut(s) 178, 719
AxyI CCTNAGG 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 1220, 1253
BalI TGGCCA 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 158, 470, 852
BccI CCATC 6 cut(s) 457, 535, 752, 786, 1181, 1232
BceAI ACGGC 2 cut(s) 63, 826
BciT130I CCWGG 2 cut(s) 143, 953
BcoDI GTCTC 7 cut(s) 56, 131, 249, 547, 792, 813, 1142
BcuI ACTAGT 1 cut(s) 700
BfaI CTAG 5 cut(s) 68, 485, 701, 974, 983
BfmI CTRYAG 2 cut(s) 456, 1141
BisI GCNGC 3 cut(s) 147, 459, 866
BlsI GCNGC 3 cut(s) 148, 460, 867
BmcAI AGTACT 1 cut(s) 999
Bme1390I CCNGG 2 cut(s) 143, 953
Bme18I GGWCC 2 cut(s) 178, 719
BmeRI GACNNNNNGTC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 178, 719
BmiI GGNNCC 2 cut(s) 720, 1126
BmrFI CCNGG 2 cut(s) 143, 953
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 158, 774
BmtI GCTAGC 1 cut(s) 986
BmuI ACTGGG 1 cut(s) 39
BoxI GACNNNNGTC 1 cut(s) 635
BpiI GAAGAC 1 cut(s) 175
BpmI CTGGAG 3 cut(s) 761, 935, 956
Bpu14I TTCGAA 2 cut(s) 166, 732
BpuEI CTTGAG 2 cut(s) 427, 1196
BsaI GGTCTC 3 cut(s) 131, 249, 792
BsaJI CCNNGG 3 cut(s) 141, 262, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 1012, 1230
Bse1I ACTGG 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 820
BseBI CCWGG 2 cut(s) 143, 953
BseDI CCNNGG 3 cut(s) 141, 262, 1006
BseGI GGATG 1 cut(s) 1239
BseLI CCNNNNNNNGG 2 cut(s) 1012, 1230
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 2 cut(s) 291, 585
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 1137, 1284
BseXI GCAGC 3 cut(s) 158, 470, 852
BseYI CCCAGC 1 cut(s) 1164
BshFI GGCC 1 cut(s) 611
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 2 cut(s) 1012, 1230
BsmAI GTCTC 7 cut(s) 56, 131, 249, 547, 792, 813, 1142
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 732
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 3 cut(s) 131, 249, 792
Bsp119I TTCGAA 2 cut(s) 166, 732
Bsp143I GATC 5 cut(s) 58, 670, 853, 901, 946
BspACI CCGC 3 cut(s) 176, 212, 301
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 2 cut(s) 290, 586
BspHI TCATGA 2 cut(s) 199, 750
BspLI GGNNCC 2 cut(s) 720, 1126
BspMAI CTGCAG 1 cut(s) 460
BspOI GCTAGC 1 cut(s) 986
BspPI GGATC 1 cut(s) 678
BspT104I TTCGAA 2 cut(s) 166, 732
BspTNI GGTCTC 3 cut(s) 131, 249, 792
BsrDI GCAATG 1 cut(s) 820
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 141, 262, 1006
BssMI GATC 5 cut(s) 58, 670, 853, 901, 946
BssT1I CCWWGG 1 cut(s) 1006
Bst2UI CCWGG 2 cut(s) 143, 953
Bst4CI ACNGT 7 cut(s) 431, 444, 589, 805, 873, 1114, 1145
Bst6I CTCTTC 1 cut(s) 621
BstBI TTCGAA 2 cut(s) 166, 732
BstC8I GCNNGC 2 cut(s) 711, 984
BstDEI CTNAG 5 cut(s) 239, 277, 329, 594, 692
BstEII GGTNACC 1 cut(s) 444
BstF5I GGATG 1 cut(s) 1239
BstKTI GATC 5 cut(s) 61, 673, 856, 904, 949
BstMAI GTCTC 7 cut(s) 56, 131, 249, 547, 792, 813, 1142
BstMBI GATC 5 cut(s) 58, 670, 853, 901, 946
BstNI CCWGG 2 cut(s) 143, 953
BstNSI RCATGY 3 cut(s) 233, 286, 713
BstPAI GACNNNNGTC 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 141, 951
BstSFI CTRYAG 2 cut(s) 456, 1141
BstV1I GCAGC 3 cut(s) 158, 470, 852
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu36I CCTNAGG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 611
BtsCI GGATG 1 cut(s) 1239
BtsIMutI CAGTG 2 cut(s) 436, 1119
Cac8I GCNNGC 2 cut(s) 711, 984
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 2 cut(s) 199, 750
Cfr13I GGNCC 2 cut(s) 178, 719
CpoI CGGWCCG 1 cut(s) 178
Csp6I GTAC 2 cut(s) 998, 1298
CspI CGGWCCG 1 cut(s) 178
CviQI GTAC 2 cut(s) 998, 1298
DdeI CTNAG 5 cut(s) 239, 277, 329, 594, 692
DpnI GATC 5 cut(s) 60, 672, 855, 903, 948
DpnII GATC 5 cut(s) 58, 670, 853, 901, 946
DriI GACNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 1 cut(s) 621
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 621
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 1006
Eco31I GGTCTC 3 cut(s) 131, 249, 792
Eco47I GGWCC 2 cut(s) 178, 719
Eco57I CTGAAG 3 cut(s) 147, 443, 1052
Eco81I CCTNAGG 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 1244
EcoRII CCWGG 2 cut(s) 141, 951
EcoT14I CCWWGG 1 cut(s) 1006
EcoT22I ATGCAT 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 1006
Esp3I CGTCTC 1 cut(s) 56
FaqI GGGAC 1 cut(s) 732
Fnu4HI GCNGC 3 cut(s) 147, 459, 866
FokI GGATG 1 cut(s) 1246
Fsp4HI GCNGC 3 cut(s) 147, 459, 866
FspBI CTAG 5 cut(s) 68, 485, 701, 974, 983
GluI GCNGC 3 cut(s) 147, 459, 866
GsaI CCCAGC 1 cut(s) 1168
GsuI CTGGAG 3 cut(s) 761, 935, 956
HaeIII GGCC 1 cut(s) 611
HincII GTYRAC 5 cut(s) 640, 808, 930, 1064, 1221
HindII GTYRAC 5 cut(s) 640, 808, 930, 1064, 1221
HinfI GANTC 2 cut(s) 574, 882
HpaI GTTAAC 2 cut(s) 930, 1221
HphI GGTGA 3 cut(s) 811, 896, 913
Hpy166II GTNNAC 7 cut(s) 403, 640, 808, 930, 1064, 1110, 1221
Hpy188I TCNGA 8 cut(s) 127, 263, 280, 423, 537, 1030, 1048, 1157
Hpy188III TCNNGA 9 cut(s) 200, 476, 485, 653, 740, 751, 851, 1184, 1241
Hpy8I GTNNAC 7 cut(s) 403, 640, 808, 930, 1064, 1110, 1221
HpyAV CCTTC 5 cut(s) 349, 661, 1043, 1259, 1311
HpyCH4III ACNGT 7 cut(s) 431, 444, 589, 805, 873, 1114, 1145
HpyCH4IV ACGT 3 cut(s) 94, 493, 632
HpyCH4V TGCA 7 cut(s) 312, 458, 628, 709, 713, 868, 1150
HpyF3I CTNAG 5 cut(s) 239, 277, 329, 594, 692
HpySE526I ACGT 3 cut(s) 94, 493, 632
KspAI GTTAAC 2 cut(s) 930, 1221
Kzo9I GATC 5 cut(s) 58, 670, 853, 901, 946
LmnI GCTCC 2 cut(s) 214, 1124
Lsp1109I GCAGC 3 cut(s) 158, 470, 852
LweI GCATC 2 cut(s) 158, 774
MaeI CTAG 5 cut(s) 68, 485, 701, 974, 983
MaeII ACGT 3 cut(s) 94, 493, 632
MaeIII GTNAC 6 cut(s) 303, 444, 583, 589, 799, 1306
MalI GATC 5 cut(s) 60, 672, 855, 903, 948
MboI GATC 5 cut(s) 58, 670, 853, 901, 946
MboII GAAGA 9 cut(s) 114, 180, 359, 436, 550, 608, 773, 891, 911
MflI RGATCY 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 611
MluNI TGGCCA 1 cut(s) 611
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 715
MscI TGGCCA 1 cut(s) 611
MseI TTAA 9 cut(s) 26, 39, 296, 416, 516, 929, 992, 1100, 1220
Msp20I TGGCCA 1 cut(s) 611
MspR9I CCNGG 2 cut(s) 143, 953
MvaI CCWGG 2 cut(s) 143, 953
NdeII GATC 5 cut(s) 58, 670, 853, 901, 946
NheI GCTAGC 1 cut(s) 982
NlaIV GGNNCC 2 cut(s) 720, 1126
NmeAIII GCCGAG 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 303, 799
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 3 cut(s) 233, 286, 713
NspV TTCGAA 2 cut(s) 166, 732
PaeI GCATGC 1 cut(s) 713
PagI TCATGA 2 cut(s) 199, 750
PciI ACATGT 2 cut(s) 229, 282
PcsI WCGNNNNNNNCGW 1 cut(s) 1237
PfeI GAWTC 2 cut(s) 574, 882
PfoI TCCNGGA 1 cut(s) 951
PkrI GCNGC 3 cut(s) 148, 460, 867
PscI ACATGT 2 cut(s) 229, 282
PshAI GACNNNNGTC 1 cut(s) 635
PshBI ATTAAT 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 141, 951
PspEI GGTNACC 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 1164
PspGI CCWGG 2 cut(s) 141, 951
PspN4I GGNNCC 2 cut(s) 720, 1126
PspPI GGNCC 2 cut(s) 178, 719
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 2 cut(s) 999, 1299
RsaNI GTAC 2 cut(s) 998, 1298
Rsr2I CGGWCCG 1 cut(s) 178
RsrII CGGWCCG 1 cut(s) 178
SaqAI TTAA 9 cut(s) 26, 39, 296, 416, 516, 929, 992, 1100, 1220
SatI GCNGC 3 cut(s) 147, 459, 866
Sau3AI GATC 5 cut(s) 58, 670, 853, 901, 946
Sau96I GGNCC 2 cut(s) 178, 719
ScaI AGTACT 1 cut(s) 999
ScrFI CCNGG 2 cut(s) 143, 953
SfaNI GCATC 2 cut(s) 158, 774
SfcI CTRYAG 2 cut(s) 456, 1141
SfuI TTCGAA 2 cut(s) 166, 732
SinI GGWCC 2 cut(s) 178, 719
SmlI CTYRAG 2 cut(s) 406, 1211
SmoI CTYRAG 2 cut(s) 406, 1211
SpeI ACTAGT 1 cut(s) 700
SphI GCATGC 1 cut(s) 713
SsiI CCGC 3 cut(s) 176, 212, 301
SspI AATATT 2 cut(s) 37, 388
SspMI CTAG 5 cut(s) 68, 485, 701, 974, 983
StyD4I CCNGG 2 cut(s) 141, 951
StyI CCWWGG 1 cut(s) 1006
TaaI ACNGT 7 cut(s) 431, 444, 589, 805, 873, 1114, 1145
TaiI ACGT 3 cut(s) 97, 496, 635
TaqI TCGA 3 cut(s) 166, 732, 1281
TaqII GACCGA 1 cut(s) 774
TatI WGTACW 1 cut(s) 997
TfiI GAWTC 2 cut(s) 574, 882
Tru1I TTAA 9 cut(s) 26, 39, 296, 416, 516, 929, 992, 1100, 1220
Tru9I TTAA 9 cut(s) 26, 39, 296, 416, 516, 929, 992, 1100, 1220
TscAI CASTG 2 cut(s) 436, 1119
TseFI GTSAC 2 cut(s) 303, 799
TseI GCWGC 3 cut(s) 146, 458, 865
Tsp45I GTSAC 2 cut(s) 303, 799
TspDTI ATGAA 3 cut(s) 237, 368, 767
TspGWI ACGGA 3 cut(s) 170, 204, 1246
TspRI CASTG 2 cut(s) 436, 1119
VpaK11BI GGWCC 2 cut(s) 178, 719
VspI ATTAAT 1 cut(s) 296
XapI RAATTY 3 cut(s) 341, 394, 1244
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 3 cut(s) 233, 286, 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XspI CTAG 5 cut(s) 68, 485, 701, 974, 983
ZrmI AGTACT 1 cut(s) 999
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.