Rroxscaffold_4G00306850

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004403
Physical Location & Seq
Forward (+)
27783466 .. 27789215
5750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306850.1

Sequence Viewer

Length: 633 bp
ATGGCCACGTGTCTCCCCTTCCGCTCCATCCCCTTCAAACCCAACACCTCCTCCTCCTCCCGCCCCGCTAAAATCACCTGCTCCTCCGTCACCGCCCAATCCCGCCTCGCCAAGCAAGACCTCCTCGCTCTCATCGCCGACCAGGACCGCGGCCTCAAGACCCAGACCGACCCCACCAAACGCGCCTCCATCATCAAGGCCATCGACGCCCTGGCCGATCTCGGCAAAGGTACCGTCACCACCGGTAGCGACCTCTCCGCCACGTGGCGGCTGCTGTGGACGACCGAGAAGGAGCAGCTCTTCATCATCCAGAACGCGTCCGTGTTCGGCACGCGCGCCGGCGACGTTTTGCAGGTCATCGATGTTGACCGGAAGGTCCTCAACAATGTCATCACTTTCCCTCCCGATGGTGTCTTCTTTGTTCGCTCCACTATCGAAGTCGCTTCGCCGCAGAGAGTGAATTTTAGGTTTACGAGTGCGGTTCTAAGAGGGAAGAGCTGGGAGTTTCCGTTGCCGCCGTTCGGCCAGGGCTGGTTTGAGTCTGTGTACCTTGATGATGAGATTCGAGTTGTAAAGGATATCAGAGGAGACTATTTGGTTGTAGACCGTGCTCCCTATACTTGGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

210

Amino Acids

23.41

Weight (kDa)

9.14

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 37 - 201 7.1e-36 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
AasI GACNNNNNNGTC 1 cut(s) 374
Acc36I ACCTGC 2 cut(s) 86, 343
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 230
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 603
AccII CGCG 5 cut(s) 150, 183, 317, 334, 336
AcoI YGGCCR 3 cut(s) 3, 213, 523
AcsI RAATTY 1 cut(s) 460
AcvI CACGTG 2 cut(s) 9, 264
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 232, 548
AfiI CCNNNNNNNGG 5 cut(s) 264, 267, 407, 521, 621
AflIII ACRYGT 2 cut(s) 8, 315
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 3 cut(s) 141, 210, 525
AluBI AGCT 2 cut(s) 298, 498
AluI AGCT 2 cut(s) 298, 498
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 2 cut(s) 17, 582
AoxI GGCC 5 cut(s) 3, 151, 198, 213, 523
ApeKI GCWGC 2 cut(s) 271, 295
ApoI RAATTY 1 cut(s) 460
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AsiGI ACCGGT 1 cut(s) 242
Asp718I GGTACC 1 cut(s) 230
AspLEI GCGC 3 cut(s) 185, 336, 338
AspS9I GGNCC 2 cut(s) 145, 376
AsuHPI GGTGA 3 cut(s) 67, 82, 229
AvaII GGWCC 2 cut(s) 145, 376
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 230
BbrPI CACGTG 2 cut(s) 9, 264
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 2 cut(s) 258, 307
BccI CCATC 4 cut(s) 35, 197, 209, 401
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 3 cut(s) 143, 212, 527
BcoDI GTCTC 2 cut(s) 17, 582
BfuAI ACCTGC 2 cut(s) 86, 343
BisI GCNGC 6 cut(s) 151, 269, 272, 296, 449, 515
BlsI GCNGC 6 cut(s) 152, 270, 273, 297, 450, 516
Bme1390I CCNGG 3 cut(s) 143, 212, 527
Bme18I GGWCC 2 cut(s) 145, 376
BmgT120I GGNCC 2 cut(s) 145, 376
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 3 cut(s) 143, 212, 527
BpiI GAAGAC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 360
BsaAI YACGTR 2 cut(s) 9, 264
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 148, 210, 526
BsaWI WCCGGW 2 cut(s) 242, 369
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 385, 415, 494, 524
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 267, 407, 521, 621
Bse118I RCCGGY 2 cut(s) 242, 338
BseBI CCWGG 3 cut(s) 143, 212, 527
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 148, 210, 526
BseGI GGATG 2 cut(s) 27, 306
BseLI CCNNNNNNNGG 5 cut(s) 264, 267, 407, 521, 621
BsePI GCGCGC 1 cut(s) 334
BseRI GAGGAG 6 cut(s) 40, 43, 46, 73, 113, 600
BseXI GCAGC 2 cut(s) 258, 307
BseYI CCCAGC 1 cut(s) 498
Bsh1236I CGCG 5 cut(s) 150, 183, 317, 334, 336
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 5 cut(s) 5, 153, 200, 215, 525
BshNI GGYRCC 1 cut(s) 230
BshTI ACCGGT 1 cut(s) 242
BshVI ATCGAT 1 cut(s) 360
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 3 cut(s) 243, 339, 370
BslI CCNNNNNNNGG 5 cut(s) 264, 267, 407, 521, 621
BsmAI GTCTC 2 cut(s) 17, 582
BsnI GGCC 5 cut(s) 5, 153, 200, 215, 525
Bsp1286I GDGCHC 1 cut(s) 613
Bsp143I GATC 1 cut(s) 217
BspANI GGCC 5 cut(s) 5, 153, 200, 215, 525
BspDI ATCGAT 1 cut(s) 360
BspFNI CGCG 5 cut(s) 150, 183, 317, 334, 336
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 2 cut(s) 86, 343
BspQI GCTCTTC 2 cut(s) 305, 488
BspT107I GGYRCC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 242, 338
BssAI RCCGGY 2 cut(s) 242, 338
BssECI CCNNGG 3 cut(s) 148, 210, 526
BssHII GCGCGC 1 cut(s) 334
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 3 cut(s) 143, 212, 527
Bst4CI ACNGT 2 cut(s) 235, 608
Bst6I CTCTTC 2 cut(s) 305, 488
BstACI GRCGYC 1 cut(s) 207
BstBAI YACGTR 2 cut(s) 9, 264
BstC8I GCNNGC 3 cut(s) 332, 336, 340
BstDEI CTNAG 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 27, 306
BstFNI CGCG 5 cut(s) 150, 183, 317, 334, 336
BstHHI GCGC 3 cut(s) 185, 336, 338
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 2 cut(s) 17, 582
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 134, 206
BstNI CCWGG 3 cut(s) 143, 212, 527
BstSCI CCNGG 3 cut(s) 141, 210, 525
BstUI CGCG 5 cut(s) 150, 183, 317, 334, 336
BstV1I GCAGC 2 cut(s) 258, 307
BstV2I GAAGAC 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 5 cut(s) 5, 153, 200, 215, 525
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 27, 306
BveI ACCTGC 2 cut(s) 86, 343
Cac8I GCNNGC 3 cut(s) 332, 336, 340
CfoI GCGC 3 cut(s) 185, 336, 338
Cfr10I RCCGGY 2 cut(s) 242, 338
Cfr13I GGNCC 2 cut(s) 145, 376
Cfr42I CCGCGG 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 360
CseI GACGC 2 cut(s) 215, 306
Csp6I GTAC 2 cut(s) 231, 547
CspAI ACCGGT 1 cut(s) 242
CviJI RGCY 9 cut(s) 5, 153, 200, 215, 271, 298, 498, 525, 531
CviKI_1 RGCY 9 cut(s) 5, 153, 200, 215, 271, 298, 498, 525, 531
CviQI GTAC 2 cut(s) 231, 547
DdeI CTNAG 1 cut(s) 485
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 3 cut(s) 3, 213, 523
Eam1104I CTCTTC 2 cut(s) 305, 488
EarI CTCTTC 2 cut(s) 305, 488
EciI GGCGGA 1 cut(s) 247
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 145, 376
Eco72I CACGTG 2 cut(s) 9, 264
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 3 cut(s) 141, 210, 525
EcoRV GATATC 1 cut(s) 580
FaiI YATR 1 cut(s) 618
FauI CCCGC 3 cut(s) 68, 73, 110
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 6 cut(s) 151, 269, 272, 296, 449, 515
FokI GGATG 2 cut(s) 14, 293
Fsp4HI GCNGC 6 cut(s) 151, 269, 272, 296, 449, 515
GlaI GCGC 3 cut(s) 184, 335, 337
GluI GCNGC 6 cut(s) 151, 269, 272, 296, 449, 515
GsaI CCCAGC 1 cut(s) 502
HaeIII GGCC 5 cut(s) 5, 153, 200, 215, 525
HapII CCGG 3 cut(s) 243, 339, 370
HgaI GACGC 2 cut(s) 215, 306
HhaI GCGC 3 cut(s) 185, 336, 338
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 3 cut(s) 183, 334, 336
HinP1I GCGC 3 cut(s) 183, 334, 336
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 539, 562
HpaII CCGG 3 cut(s) 243, 339, 370
HphI GGTGA 3 cut(s) 67, 82, 229
Hpy166II GTNNAC 5 cut(s) 279, 367, 471, 547, 604
Hpy188I TCNGA 1 cut(s) 584
Hpy188III TCNNGA 3 cut(s) 157, 310, 404
Hpy8I GTNNAC 5 cut(s) 279, 367, 471, 547, 604
Hpy99I CGWCG 2 cut(s) 209, 347
HpyAV CCTTC 4 cut(s) 28, 43, 283, 367
HpyCH4III ACNGT 2 cut(s) 235, 608
HpyCH4IV ACGT 3 cut(s) 8, 263, 345
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 206
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 3 cut(s) 8, 263, 345
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 3 cut(s) 183, 334, 336
KpnI GGTACC 1 cut(s) 234
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 2 cut(s) 305, 488
LmnI GCTCC 5 cut(s) 29, 86, 292, 431, 616
Lsp1109I GCAGC 2 cut(s) 258, 307
MaeII ACGT 3 cut(s) 8, 263, 345
MaeIII GTNAC 2 cut(s) 88, 235
MalI GATC 1 cut(s) 219
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 292, 406, 505
MhlI GDGCHC 1 cut(s) 613
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 460
MluI ACGCGT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 548
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 338
MroNI GCCGGC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 3 cut(s) 243, 339, 370
MspR9I CCNGG 3 cut(s) 143, 212, 527
MvaI CCWGG 3 cut(s) 143, 212, 527
MvnI CGCG 5 cut(s) 150, 183, 317, 334, 336
MwoI GCNNNNNNNGC 2 cut(s) 134, 206
NaeI GCCGGC 1 cut(s) 340
NdeII GATC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 88, 235
PaqCI CACCTGC 1 cut(s) 86
PauI GCGCGC 1 cut(s) 334
PciSI GCTCTTC 2 cut(s) 305, 488
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 562
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 6 cut(s) 152, 270, 273, 297, 450, 516
PleI GAGTC 1 cut(s) 547
PmaCI CACGTG 2 cut(s) 9, 264
PmlI CACGTG 2 cut(s) 9, 264
PpsI GAGTC 1 cut(s) 547
Ppu21I YACGTR 2 cut(s) 9, 264
PpuMI RGGWCCY 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 3 cut(s) 141, 210, 525
PspCI CACGTG 2 cut(s) 9, 264
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 3 cut(s) 141, 210, 525
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 145, 376
PspPPI RGGWCCY 1 cut(s) 376
PteI GCGCGC 1 cut(s) 334
RsaI GTAC 2 cut(s) 232, 548
RsaNI GTAC 2 cut(s) 231, 547
SacII CCGCGG 1 cut(s) 151
SapI GCTCTTC 2 cut(s) 305, 488
SatI GCNGC 6 cut(s) 151, 269, 272, 296, 449, 515
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 145, 376
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 143, 212, 527
SduI GDGCHC 1 cut(s) 613
Sfr303I CCGCGG 1 cut(s) 151
SgrAI CRCCGGYG 1 cut(s) 338
SgrBI CCGCGG 1 cut(s) 151
SinI GGWCC 2 cut(s) 145, 376
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 460
StyD4I CCNGG 3 cut(s) 141, 210, 525
TaaI ACNGT 2 cut(s) 235, 608
TaiI ACGT 3 cut(s) 11, 266, 348
TaqI TCGA 4 cut(s) 204, 360, 435, 565
TaqII GACCGA 2 cut(s) 182, 299
TasI AATT 1 cut(s) 460
TauI GCSGC 4 cut(s) 153, 271, 451, 517
TfiI GAWTC 1 cut(s) 562
TseFI GTSAC 2 cut(s) 88, 235
TseI GCWGC 2 cut(s) 271, 295
Tsp45I GTSAC 2 cut(s) 88, 235
TspDTI ATGAA 1 cut(s) 292
TspGWI ACGGA 3 cut(s) 76, 310, 498
VpaK11BI GGWCC 2 cut(s) 145, 376
XapI RAATTY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.