Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019657.1

Orthogroup ID

OG0004403

Physical Location & Seq

Genomic Coordinates Reverse (-)

591 .. 1073

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019657.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggccacgtgtctccccttccgctccatccccttcaaacccaacacctcctcctcctcctcctcctcctcccgccccgctaaaatcacctgctcctccgtcaccgcccaatcccgcctcgccaagcaagacctcctcgccctcatcgccgaccaggaccgcggcctcaagacccagaccgaccccaccaaacgcgcctccatcatcaaggccatcgacgccctggccgatctcggcaacggtaccgtcaccaccggcagcgacctctccgccacgtggcggcttctgtggacgaccgagaaggagcagctcttcatcatccagaacgcgtccgtgttcggcacgcgcgccggcgacgttttgcaggtaatcgatgttgaccggaaggtcctcaacaatgtcatcactttccctcccgatggtgtcttctttgttcgctccaccatcgaagtcgcttcgccgcagagagtgaattttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

160

Amino Acids

17.39

Weight (kDa)

9.62

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00030
fragaria_vesca	FvH4_7g10720 FvH4_7g10720 FvH4_7g10720
malus_domestica	MD07G1111900.v1.1
prunus_persica	Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1
pyrus_communis	pycom07g09700
rosa_chinensis	RchiOBHm_Chr1g0348671
rosa_laevigata	RLG00000028632
rosa_multiflora	Rmu_co8029388.1_g000001 Rmu_sc0019657.1_g000002 Rmu_sc0028436.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306850
rosa_rugosa	Rorug01G0196000 Rorug01G0196000 Rorug01G0196000 Rorug01G0196100 Rorug01G0196200 Rorug01G0196300 Rorug01G0196400 Rorug01G0196500 Rorug01G0196600
rosa_samantha	Rh1AG213900 Rh1BG180400 Rh1CG198600 Rh1DG210400
rosa_wichuraiana	Rw1G018120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
AasI	GACNNNNNNGTC	1 cut(s)	386
Acc36I	ACCTGC	2 cut(s)	98, 355
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	24
AccII	CGCG	5 cut(s)	162, 195, 329, 346, 348
AcoI	YGGCCR	2 cut(s)	3, 225
AcsI	RAATTY	1 cut(s)	472
AcvI	CACGTG	2 cut(s)	9, 276
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	276, 279, 419
AflIII	ACRYGT	2 cut(s)	8, 327
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	153, 222
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	4 cut(s)	3, 163, 210, 225
ApeKI	GCWGC	2 cut(s)	258, 307
ApoI	RAATTY	1 cut(s)	472
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	3 cut(s)	197, 348, 350
AspS9I	GGNCC	2 cut(s)	157, 388
AsuHPI	GGTGA	3 cut(s)	79, 94, 241
AvaII	GGWCC	2 cut(s)	157, 388
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	242
BbrPI	CACGTG	2 cut(s)	9, 276
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	270, 319
BccI	CCATC	5 cut(s)	35, 209, 221, 413, 452
BciT130I	CCWGG	2 cut(s)	155, 224
BcoDI	GTCTC	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	98, 355
BisI	GCNGC	5 cut(s)	163, 259, 281, 308, 461
BlsI	GCNGC	5 cut(s)	164, 260, 282, 309, 462
Bme1390I	CCNGG	2 cut(s)	155, 224
Bme18I	GGWCC	2 cut(s)	157, 388
BmgT120I	GGNCC	2 cut(s)	157, 388
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	155, 224
BpiI	GAAGAC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	372
BsaAI	YACGTR	2 cut(s)	9, 276
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	160, 222
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 397, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 279, 419
Bse118I	RCCGGY	2 cut(s)	254, 350
BseBI	CCWGG	2 cut(s)	155, 224
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	160, 222
BseGI	GGATG	2 cut(s)	27, 318
BseLI	CCNNNNNNNGG	3 cut(s)	276, 279, 419
BsePI	GCGCGC	1 cut(s)	346
BseRI	GAGGAG	9 cut(s)	40, 43, 46, 49, 52, 55, 58, 85, 125
BseXI	GCAGC	2 cut(s)	270, 319
Bsh1236I	CGCG	5 cut(s)	162, 195, 329, 346, 348
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	4 cut(s)	5, 165, 212, 227
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	255, 351, 382
BslI	CCNNNNNNNGG	3 cut(s)	276, 279, 419
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	4 cut(s)	5, 165, 212, 227
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	4 cut(s)	5, 165, 212, 227
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	5 cut(s)	162, 195, 329, 346, 348
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	2 cut(s)	98, 355
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	254, 350
BssAI	RCCGGY	2 cut(s)	254, 350
BssECI	CCNNGG	2 cut(s)	160, 222
BssHII	GCGCGC	1 cut(s)	346
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	155, 224
Bst4CI	ACNGT	2 cut(s)	242, 247
Bst6I	CTCTTC	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	2 cut(s)	9, 276
BstC8I	GCNNGC	3 cut(s)	344, 348, 352
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	27, 318
BstFNI	CGCG	5 cut(s)	162, 195, 329, 346, 348
BstHHI	GCGC	3 cut(s)	197, 348, 350
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 218
BstNI	CCWGG	2 cut(s)	155, 224
BstSCI	CCNGG	2 cut(s)	153, 222
BstUI	CGCG	5 cut(s)	162, 195, 329, 346, 348
BstV1I	GCAGC	2 cut(s)	270, 319
BstV2I	GAAGAC	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	5, 165, 212, 227
BsuTUI	ATCGAT	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	27, 318
BveI	ACCTGC	2 cut(s)	98, 355
Cac8I	GCNNGC	3 cut(s)	344, 348, 352
CfoI	GCGC	3 cut(s)	197, 348, 350
Cfr10I	RCCGGY	2 cut(s)	254, 350
Cfr13I	GGNCC	2 cut(s)	157, 388
Cfr42I	CCGCGG	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	2 cut(s)	227, 318
Csp6I	GTAC	1 cut(s)	243
CviJI	RGCY	6 cut(s)	5, 165, 212, 227, 283, 310
CviKI_1	RGCY	6 cut(s)	5, 165, 212, 227, 283, 310
CviQI	GTAC	1 cut(s)	243
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	2 cut(s)	3, 225
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
EciI	GGCGGA	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	157, 388
Eco72I	CACGTG	2 cut(s)	9, 276
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	153, 222
FauI	CCCGC	3 cut(s)	80, 85, 122
Fnu4HI	GCNGC	5 cut(s)	163, 259, 281, 308, 461
FokI	GGATG	2 cut(s)	14, 305
Fsp4HI	GCNGC	5 cut(s)	163, 259, 281, 308, 461
GlaI	GCGC	3 cut(s)	196, 347, 349
GluI	GCNGC	5 cut(s)	163, 259, 281, 308, 461
HaeIII	GGCC	4 cut(s)	5, 165, 212, 227
HapII	CCGG	3 cut(s)	255, 351, 382
HgaI	GACGC	2 cut(s)	227, 318
HhaI	GCGC	3 cut(s)	197, 348, 350
Hin1I	GRCGYC	1 cut(s)	219
Hin6I	GCGC	3 cut(s)	195, 346, 348
HinP1I	GCGC	3 cut(s)	195, 346, 348
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HpaII	CCGG	3 cut(s)	255, 351, 382
HphI	GGTGA	3 cut(s)	79, 94, 241
Hpy166II	GTNNAC	2 cut(s)	291, 379
Hpy188III	TCNNGA	3 cut(s)	169, 322, 416
Hpy8I	GTNNAC	2 cut(s)	291, 379
Hpy99I	CGWCG	2 cut(s)	221, 359
HpyAV	CCTTC	4 cut(s)	28, 43, 295, 379
HpyCH4III	ACNGT	2 cut(s)	242, 247
HpyCH4IV	ACGT	3 cut(s)	8, 275, 357
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 218
HpySE526I	ACGT	3 cut(s)	8, 275, 357
Hsp92I	GRCGYC	1 cut(s)	219
HspAI	GCGC	3 cut(s)	195, 346, 348
KpnI	GGTACC	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	4 cut(s)	29, 98, 304, 443
Lsp1109I	GCAGC	2 cut(s)	270, 319
MaeII	ACGT	3 cut(s)	8, 275, 357
MaeIII	GTNAC	2 cut(s)	100, 247
MalI	GATC	1 cut(s)	231
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	304, 418
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	472
MluI	ACGCGT	1 cut(s)	327
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	3 cut(s)	255, 351, 382
MspR9I	CCNGG	2 cut(s)	155, 224
MvaI	CCWGG	2 cut(s)	155, 224
MvnI	CGCG	5 cut(s)	162, 195, 329, 346, 348
MwoI	GCNNNNNNNGC	2 cut(s)	146, 218
NaeI	GCCGGC	1 cut(s)	352
NdeII	GATC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	100, 247
PaqCI	CACCTGC	1 cut(s)	98
PauI	GCGCGC	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	352
PkrI	GCNGC	5 cut(s)	164, 260, 282, 309, 462
PmaCI	CACGTG	2 cut(s)	9, 276
PmlI	CACGTG	2 cut(s)	9, 276
Ppu21I	YACGTR	2 cut(s)	9, 276
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	153, 222
PspCI	CACGTG	2 cut(s)	9, 276
PspGI	CCWGG	2 cut(s)	153, 222
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	157, 388
PspPPI	RGGWCCY	1 cut(s)	388
PteI	GCGCGC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	317
SatI	GCNGC	5 cut(s)	163, 259, 281, 308, 461
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	157, 388
ScrFI	CCNGG	2 cut(s)	155, 224
Sfr303I	CCGCGG	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	350
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	157, 388
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	153, 222
TaaI	ACNGT	2 cut(s)	242, 247
TaiI	ACGT	3 cut(s)	11, 278, 360
TaqI	TCGA	3 cut(s)	216, 372, 447
TaqII	GACCGA	2 cut(s)	194, 311
TasI	AATT	1 cut(s)	472
TauI	GCSGC	3 cut(s)	165, 283, 463
TseFI	GTSAC	2 cut(s)	100, 247
TseI	GCWGC	2 cut(s)	258, 307
Tsp45I	GTSAC	2 cut(s)	100, 247
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	2 cut(s)	88, 322
VpaK11BI	GGWCC	2 cut(s)	157, 388
XapI	RAATTY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.