Rh1DG210400

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004403
Physical Location & Seq
Reverse (-)
40955965 .. 40962515
6551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG210400.1

Sequence Viewer

Length: 756 bp
ATGGGGATTCGTCATCCGTACACAAAGGCCCCAACAATCTTCAACCTTTCAAAGTTTGATTTTCAACCGCCAATTATCCATTTCCTCCTCAAAACCACTACTAGCCATGAAGGAAGTCTCCAAACCTCAAACCTCTCCATCACCATCACTCTCTCCTCCTCCTTAATCCATTCCCTCCACATGGCCACGTGTCTCCCCTTCCGCGCCATCCCCTTCAAACCCAACACCTCCTCCTCCTCCTGCCGCCCCGCTAAAATCACCTGCTCCTCCGTCACCGCCCAATCCCGTCTCGCCAAGCAAGACCTCCTCGCCCTCATCGCCGACCAGGACCGCGGCCTCAAGACCCAGACCGACCCCACCAAACGCGCCTCCATCATCAAGGCCATCGACGCCCTGGCCGATCTCGGCAACGGTACCGTCACCACCGGCAGCGACCTCTCCGCCACGTGGCGGCTGCTGTGGACGACCGAGAAGGAGCAGCTCTTCATCATCCAGAACGCGTCCGTGTTCGGCACGCGCGCCGGCGACGTTTTGCAGGTCATCGATGTTGACCGGAAGGTCCTCAACAATGTCATCACTTTCCCTCCCGATGGTGTCTTCTTTGTTCGCTCCACTATCGAAGTCGCTTCGCCGCAGAGAGTGAATTTTAGGTTTACGAGTGCGGTTCTACGAGGGAAGAGCTGGGAGTTTCCGTTGCCGCCGTTCGGCCAGGGCTGGTTAGTGCTTTCTTTTGTGAAATTAGCTAATAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

251

Amino Acids

27.63

Weight (kDa)

9.79

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 98 - 227 6.6e-28 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
AasI GACNNNNNNGTC 1 cut(s) 557
Acc36I ACCTGC 2 cut(s) 269, 526
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 6 cut(s) 204, 333, 366, 500, 517, 519
AcoI YGGCCR 3 cut(s) 183, 396, 706
AcsI RAATTY 1 cut(s) 643
AcvI CACGTG 2 cut(s) 189, 447
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 20, 415
AfiI CCNNNNNNNGG 5 cut(s) 181, 447, 450, 590, 704
AflIII ACRYGT 2 cut(s) 188, 498
AgsI TTSAA 4 cut(s) 43, 51, 65, 217
AjnI CCWGG 3 cut(s) 324, 393, 708
AluBI AGCT 3 cut(s) 481, 681, 743
AluI AGCT 3 cut(s) 481, 681, 743
Alw26I GTCTC 3 cut(s) 122, 197, 293
AoxI GGCC 6 cut(s) 27, 183, 334, 381, 396, 706
ApeKI GCWGC 3 cut(s) 429, 454, 478
ApoI RAATTY 1 cut(s) 643
Asp718I GGTACC 1 cut(s) 413
AspLEI GCGC 4 cut(s) 206, 368, 519, 521
AspS9I GGNCC 3 cut(s) 28, 328, 559
AsuHPI GGTGA 4 cut(s) 133, 250, 265, 412
AvaII GGWCC 2 cut(s) 328, 559
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 413
BbrPI CACGTG 2 cut(s) 189, 447
BbsI GAAGAC 1 cut(s) 589
BbvI GCAGC 3 cut(s) 441, 441, 490
BccI CCATC 6 cut(s) 146, 152, 215, 380, 392, 584
BceAI ACGGC 1 cut(s) 685
BciT130I CCWGG 3 cut(s) 326, 395, 710
BcoDI GTCTC 3 cut(s) 122, 197, 293
BfaI CTAG 1 cut(s) 102
BfuAI ACCTGC 2 cut(s) 269, 526
BisI GCNGC 8 cut(s) 244, 334, 430, 452, 455, 479, 632, 698
BlsI GCNGC 8 cut(s) 245, 335, 431, 453, 456, 480, 633, 699
Bme1390I CCNGG 3 cut(s) 326, 395, 710
Bme18I GGWCC 2 cut(s) 328, 559
BmgT120I GGNCC 3 cut(s) 28, 328, 559
BmiI GGNNCC 2 cut(s) 30, 415
BmrFI CCNGG 3 cut(s) 326, 395, 710
BpiI GAAGAC 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 543
BsaAI YACGTR 2 cut(s) 189, 447
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 331, 393, 709
BsaWI WCCGGW 1 cut(s) 552
BsaXI ACNNNNNCTCC 6 cut(s) 215, 245, 568, 598, 677, 707
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 447, 450, 590, 704
Bse118I RCCGGY 2 cut(s) 425, 521
BseBI CCWGG 3 cut(s) 326, 395, 710
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 331, 393, 709
BseGI GGATG 3 cut(s) 13, 207, 489
BseLI CCNNNNNNNGG 5 cut(s) 181, 447, 450, 590, 704
BsePI GCGCGC 1 cut(s) 517
BseRI GAGGAG 8 cut(s) 77, 145, 148, 220, 223, 226, 256, 296
BseXI GCAGC 3 cut(s) 441, 441, 490
BseYI CCCAGC 1 cut(s) 681
Bsh1236I CGCG 6 cut(s) 204, 333, 366, 500, 517, 519
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 6 cut(s) 29, 185, 336, 383, 398, 708
BshNI GGYRCC 1 cut(s) 413
BshVI ATCGAT 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 468
BsiSI CCGG 3 cut(s) 426, 522, 553
BslI CCNNNNNNNGG 5 cut(s) 181, 447, 450, 590, 704
BsmAI GTCTC 3 cut(s) 122, 197, 293
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 6 cut(s) 29, 185, 336, 383, 398, 708
Bsp143I GATC 1 cut(s) 400
BspANI GGCC 6 cut(s) 29, 185, 336, 383, 398, 708
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 6 cut(s) 204, 333, 366, 500, 517, 519
BspLI GGNNCC 2 cut(s) 30, 415
BspMI ACCTGC 2 cut(s) 269, 526
BspQI GCTCTTC 2 cut(s) 488, 671
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 2 cut(s) 425, 521
BssAI RCCGGY 2 cut(s) 425, 521
BssECI CCNNGG 3 cut(s) 331, 393, 709
BssHII GCGCGC 1 cut(s) 517
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 3 cut(s) 326, 395, 710
Bst4CI ACNGT 2 cut(s) 413, 418
Bst6I CTCTTC 2 cut(s) 488, 671
BstACI GRCGYC 1 cut(s) 390
BstBAI YACGTR 2 cut(s) 189, 447
BstC8I GCNNGC 3 cut(s) 515, 519, 523
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 13, 207, 489
BstFNI CGCG 6 cut(s) 204, 333, 366, 500, 517, 519
BstHHI GCGC 4 cut(s) 206, 368, 519, 521
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 3 cut(s) 122, 197, 293
BstMBI GATC 1 cut(s) 400
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 2 cut(s) 317, 389
BstNI CCWGG 3 cut(s) 326, 395, 710
BstSCI CCNGG 3 cut(s) 324, 393, 708
BstUI CGCG 6 cut(s) 204, 333, 366, 500, 517, 519
BstV1I GCAGC 3 cut(s) 441, 441, 490
BstV2I GAAGAC 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 6 cut(s) 29, 185, 336, 383, 398, 708
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 13, 207, 489
BveI ACCTGC 2 cut(s) 269, 526
Cac8I GCNNGC 3 cut(s) 515, 519, 523
CfoI GCGC 4 cut(s) 206, 368, 519, 521
Cfr10I RCCGGY 2 cut(s) 425, 521
Cfr13I GGNCC 3 cut(s) 28, 328, 559
Cfr42I CCGCGG 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 2 cut(s) 398, 489
Csp6I GTAC 2 cut(s) 19, 414
CviAII CATG 2 cut(s) 107, 181
CviQI GTAC 2 cut(s) 19, 414
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 3 cut(s) 183, 396, 706
Eam1104I CTCTTC 2 cut(s) 488, 671
EarI CTCTTC 2 cut(s) 488, 671
EciI GGCGGA 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 328, 559
Eco72I CACGTG 2 cut(s) 189, 447
EcoO109I RGGNCCY 2 cut(s) 28, 559
EcoRII CCWGG 3 cut(s) 324, 393, 708
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 2 cut(s) 110, 184
FaiI YATR 2 cut(s) 108, 182
FatI CATG 2 cut(s) 106, 180
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 8 cut(s) 244, 334, 430, 452, 455, 479, 632, 698
FokI GGATG 2 cut(s) 194, 476
Fsp4HI GCNGC 8 cut(s) 244, 334, 430, 452, 455, 479, 632, 698
FspBI CTAG 1 cut(s) 102
GlaI GCGC 4 cut(s) 205, 367, 518, 520
GluI GCNGC 8 cut(s) 244, 334, 430, 452, 455, 479, 632, 698
GsaI CCCAGC 1 cut(s) 685
HaeIII GGCC 6 cut(s) 29, 185, 336, 383, 398, 708
HapII CCGG 3 cut(s) 426, 522, 553
HgaI GACGC 2 cut(s) 398, 489
HhaI GCGC 4 cut(s) 206, 368, 519, 521
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 110, 184
Hin6I GCGC 4 cut(s) 204, 366, 517, 519
HinP1I GCGC 4 cut(s) 204, 366, 517, 519
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 1 cut(s) 7
HpaII CCGG 3 cut(s) 426, 522, 553
HphI GGTGA 4 cut(s) 133, 250, 265, 412
Hpy166II GTNNAC 4 cut(s) 21, 462, 550, 654
Hpy188III TCNNGA 3 cut(s) 340, 493, 587
Hpy8I GTNNAC 4 cut(s) 21, 462, 550, 654
Hpy99I CGWCG 2 cut(s) 392, 530
HpyAV CCTTC 5 cut(s) 104, 208, 223, 466, 550
HpyCH4III ACNGT 2 cut(s) 413, 418
HpyCH4IV ACGT 3 cut(s) 188, 446, 528
HpyCH4V TGCA 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 389
HpySE526I ACGT 3 cut(s) 188, 446, 528
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 110, 184
HspAI GCGC 4 cut(s) 204, 366, 517, 519
KpnI GGTACC 1 cut(s) 417
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 1 cut(s) 400
LguI GCTCTTC 2 cut(s) 488, 671
LmnI GCTCC 3 cut(s) 269, 475, 614
Lsp1109I GCAGC 3 cut(s) 441, 441, 490
MaeI CTAG 1 cut(s) 102
MaeII ACGT 3 cut(s) 188, 446, 528
MaeIII GTNAC 2 cut(s) 271, 418
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 4 cut(s) 31, 475, 589, 688
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 72, 643, 737
MluI ACGCGT 1 cut(s) 498
MluNI TGGCCA 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 185
MreI CGCCGGCG 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 521
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 3 cut(s) 426, 522, 553
MspR9I CCNGG 3 cut(s) 326, 395, 710
MvaI CCWGG 3 cut(s) 326, 395, 710
MvnI CGCG 6 cut(s) 204, 333, 366, 500, 517, 519
MwoI GCNNNNNNNGC 2 cut(s) 317, 389
NaeI GCCGGC 1 cut(s) 523
NdeII GATC 1 cut(s) 400
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 2 cut(s) 110, 184
NlaIV GGNNCC 2 cut(s) 30, 415
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 271, 418
PaqCI CACCTGC 1 cut(s) 269
PauI GCGCGC 1 cut(s) 517
PciSI GCTCTTC 2 cut(s) 488, 671
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdiI GCCGGC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 8 cut(s) 245, 335, 431, 453, 456, 480, 633, 699
PmaCI CACGTG 2 cut(s) 189, 447
PmlI CACGTG 2 cut(s) 189, 447
Ppu21I YACGTR 2 cut(s) 189, 447
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 3 cut(s) 324, 393, 708
PspCI CACGTG 2 cut(s) 189, 447
PspFI CCCAGC 1 cut(s) 681
PspGI CCWGG 3 cut(s) 324, 393, 708
PspN4I GGNNCC 2 cut(s) 30, 415
PspPI GGNCC 3 cut(s) 28, 328, 559
PspPPI RGGWCCY 1 cut(s) 559
PteI GCGCGC 1 cut(s) 517
RsaI GTAC 2 cut(s) 20, 415
RsaNI GTAC 2 cut(s) 19, 414
SacII CCGCGG 1 cut(s) 334
SapI GCTCTTC 2 cut(s) 488, 671
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 8 cut(s) 244, 334, 430, 452, 455, 479, 632, 698
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 3 cut(s) 28, 328, 559
ScrFI CCNGG 3 cut(s) 326, 395, 710
Sfr303I CCGCGG 1 cut(s) 334
SgrAI CRCCGGYG 1 cut(s) 521
SgrBI CCGCGG 1 cut(s) 334
SinI GGWCC 2 cut(s) 328, 559
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 72, 643, 737
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 324, 393, 708
TaaI ACNGT 2 cut(s) 413, 418
TaiI ACGT 3 cut(s) 191, 449, 531
TaqI TCGA 3 cut(s) 387, 543, 618
TaqII GACCGA 2 cut(s) 365, 482
TasI AATT 3 cut(s) 72, 643, 737
TauI GCSGC 5 cut(s) 246, 336, 454, 634, 700
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 2 cut(s) 271, 418
TseI GCWGC 3 cut(s) 429, 454, 478
Tsp45I GTSAC 2 cut(s) 271, 418
TspDTI ATGAA 2 cut(s) 123, 475
TspGWI ACGGA 4 cut(s) 6, 259, 493, 681
VpaK11BI GGWCC 2 cut(s) 328, 559
XapI RAATTY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.