Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004403

Physical Location & Seq

Genomic Coordinates Reverse (-)

27508189 .. 27510128

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0196200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCTGGGGCTATCGTTTCAATTGTGGTGGAAAGGCTCGCTAGCTTGACTAATGAGAAATTGAATCCTTCGAGTCGAAGGAATCAAGTCGTGAATAATCAAATTCAGAAAGCACAAAGAGAGCTAGAATTGCTGAGTAGCTACCTCGAAGATCCAAATGCAAGACAAAGCGACGATGAAGGAGTAATTGCAGCAATTAGGGATGCTGCTTGTGATTTGGAGGATGTCATCGCATCTTTTCTCTTGAAAGAGGCTTCCAATAGGAACGGGAGTAGCATGAAGATTATTGCGAAAAGGTTTGCTTGCAGTTGCATCGGTGTTGCCGCTGATCGTCATAAGACTGTGTCAGAAATTAAGAGAATTATGGTCCAACTTTCAGATTTGAGCTCTAGTTTATCAAGTTATGACATAGCCAGGCTGGAAGCGGGTATTGTATACGCCACTTTTGGACCAAGGAATCAGTTGTCGTGGCTAACATTTTCTGATGATACAGACCATATTGTTAATGATTCCGAGCGCGTATTCTACTTGACTTGGCATTTGGTGCAAGAACAAAACAGCCCTAGAGTGCTGTCTGTTTGGGGCATGGGCGGTGTGGGGAAGACCACACTTGCAAAAAGAGTCTACAACTATGATATGGTTAGACAACATTTTGACTGCTTGGCTTGGGTGTGTGTGTCTCGAGAATTTCAATCCAGAGATGTTCTGCAAGAAATCTTAACTCAACTTATCAGTGCTACCGATGAGCAACTAAGAGAGCTTGCAAAGATGAATGCCAAGGAAATAGAAACACGGCTGCGTATTACACAAAAAACGAAAAAGTGTTTTGTAGTGCTTGATGACATTTGGACCTGTGAAGCATGGGATTCTTTGAATCTTGGGTTTCCCCGTGAGGAAACAAAGAGCAAAATATTACTCACTACTCGTGATGAACAAGTAGCTTTACATGCAGATAGAAACGGTTTAATCTATAAAGTTCAACCACTAACTGACCCCGAAAGCTGGAAATTGTTCGAGAAGAGAGCATTTTCTAGACGGGATAATGAAGACTCTATTAGCGAAAAGGAGTCATTAGGAAAGAAGATGCTTGAAAGTTGTAGTGGATTGCTGTCACGCCCCGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

375

Amino Acids

42.61

Weight (kDa)

5.9

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 89	5.7e-11	Rx N-terminal domain
NB-ARC	PF00931	180 - 347	1.9e-42	NB-ARC domain
NPHP3_N	PF24883	182 - 267	7.2e-06	Nephrocystin 3, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00030
fragaria_vesca	FvH4_7g10720 FvH4_7g10720 FvH4_7g10720
malus_domestica	MD07G1111900.v1.1
prunus_persica	Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1
pyrus_communis	pycom07g09700
rosa_chinensis	RchiOBHm_Chr1g0348671
rosa_laevigata	RLG00000028632
rosa_multiflora	Rmu_co8029388.1_g000001 Rmu_sc0019657.1_g000002 Rmu_sc0028436.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306850
rosa_rugosa	Rorug01G0196000 Rorug01G0196000 Rorug01G0196000 Rorug01G0196100 Rorug01G0196200 Rorug01G0196300 Rorug01G0196400 Rorug01G0196500 Rorug01G0196600
rosa_samantha	Rh1AG213900 Rh1BG180400 Rh1CG198600 Rh1DG210400
rosa_wichuraiana	Rw1G018120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	435, 624
AccII	CGCG	1 cut(s)	519
AciI	CCGC	3 cut(s)	324, 425, 591
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	3 cut(s)	102, 686, 1121
AfiI	CCNNNNNNNGG	1 cut(s)	1002
AgsI	TTSAA	7 cut(s)	21, 64, 247, 692, 874, 980, 1091
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	7 cut(s)	45, 124, 141, 387, 760, 941, 1002
AluI	AGCT	7 cut(s)	45, 124, 141, 387, 760, 941, 1002
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	191, 206, 796
ApoI	RAATTY	3 cut(s)	102, 686, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
Asp700I	GAANNNNTTC	1 cut(s)	1010
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	367, 449, 849
AsuNHI	GCTAGC	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	3 cut(s)	367, 449, 849
BanII	GRGCYC	1 cut(s)	389
BauI	CACGAG	1 cut(s)	924
BbsI	GAAGAC	2 cut(s)	608, 1053
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	193, 203, 783
BceAI	ACGGC	1 cut(s)	809
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	5 cut(s)	42, 125, 390, 564, 1032
BisI	GCNGC	4 cut(s)	192, 207, 324, 797
BlsI	GCNGC	4 cut(s)	193, 208, 325, 798
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	3 cut(s)	367, 449, 849
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	3 cut(s)	367, 449, 849
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	4 cut(s)	193, 242, 321, 1074
BmtI	GCTAGC	1 cut(s)	45
BpiI	GAAGAC	2 cut(s)	608, 1053
BsaJI	CCNNGG	2 cut(s)	452, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	452, 777
BseGI	GGATG	2 cut(s)	208, 229
BseLI	CCNNNNNNNGG	1 cut(s)	1002
BseMII	CTCAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	193, 203, 783
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	1002
BsmAI	GTCTC	1 cut(s)	684
BsmI	GAATGC	1 cut(s)	778
BsoBI	CYCGRG	1 cut(s)	681
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	151, 328
BspACI	CCGC	3 cut(s)	324, 425, 591
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	519
BspOI	GCTAGC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	452, 777
BssMI	GATC	2 cut(s)	151, 328
BssNAI	GTATAC	1 cut(s)	436
BssSI	CACGAG	1 cut(s)	924
BssT1I	CCWWGG	2 cut(s)	452, 777
Bst1107I	GTATAC	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	924
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	2 cut(s)	343, 962
Bst6I	CTCTTC	1 cut(s)	1013
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	4 cut(s)	39, 43, 304, 762
BstDEI	CTNAG	2 cut(s)	134, 752
BstF5I	GGATG	2 cut(s)	208, 229
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	2 cut(s)	154, 331
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	2 cut(s)	151, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 544, 947
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	193, 203, 783
BstV2I	GAAGAC	2 cut(s)	608, 1053
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	208, 229
BtsIMutI	CAGTG	1 cut(s)	739
Cac8I	GCNNGC	4 cut(s)	39, 43, 304, 762
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	3 cut(s)	367, 449, 849
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	277, 586, 861, 947
DdeI	CTNAG	2 cut(s)	134, 752
DpnI	GATC	2 cut(s)	153, 330
DpnII	GATC	2 cut(s)	151, 328
Eam1104I	CTCTTC	1 cut(s)	1013
EarI	CTCTTC	1 cut(s)	1013
Ecl136II	GAGCTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	452, 777
Eco24I	GRGCYC	1 cut(s)	389
Eco47I	GGWCC	3 cut(s)	367, 449, 849
Eco53kI	GAGCTC	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	681
EcoICRI	GAGCTC	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	452, 777
EcoT38I	GRGCYC	1 cut(s)	389
ErhI	CCWWGG	2 cut(s)	452, 777
FaeI	CATG	4 cut(s)	280, 589, 864, 950
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FatI	CATG	4 cut(s)	276, 585, 860, 946
FauI	CCCGC	1 cut(s)	418
FblI	GTMKAC	2 cut(s)	435, 624
Fnu4HI	GCNGC	4 cut(s)	192, 207, 324, 797
FokI	GGATG	2 cut(s)	215, 236
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	4 cut(s)	192, 207, 324, 797
FspBI	CTAG	5 cut(s)	42, 125, 390, 564, 1032
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	4 cut(s)	192, 207, 324, 797
GsaI	CCCAGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	4 cut(s)	280, 589, 864, 950
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
Hpy166II	GTNNAC	2 cut(s)	436, 625
Hpy188I	TCNGA	5 cut(s)	108, 349, 379, 484, 514
Hpy188III	TCNNGA	8 cut(s)	91, 244, 681, 683, 696, 926, 1015, 1032
Hpy8I	GTNNAC	2 cut(s)	436, 625
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	72, 78, 173
HpyCH4III	ACNGT	2 cut(s)	343, 962
HpyCH4V	TGCA	9 cut(s)	161, 191, 306, 312, 547, 614, 709, 764, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 544, 947
HpyF3I	CTNAG	2 cut(s)	134, 752
Hsp92II	CATG	4 cut(s)	280, 589, 864, 950
HspAI	GCGC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	151, 328
LpnPI	CCDG	6 cut(s)	400, 404, 427, 709, 865, 988
Lsp1109I	GCAGC	3 cut(s)	193, 203, 783
LweI	GCATC	4 cut(s)	193, 242, 321, 1074
MaeI	CTAG	5 cut(s)	42, 125, 390, 564, 1032
MaeIII	GTNAC	1 cut(s)	1110
MalI	GATC	2 cut(s)	153, 330
MboI	GATC	2 cut(s)	151, 328
MboII	GAAGA	6 cut(s)	161, 292, 613, 1030, 1058, 1093
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	389
MlyI	GAGTC	4 cut(s)	82, 630, 1043, 1076
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	155, 214, 244, 886
MroXI	GAANNNNTTC	1 cut(s)	1010
MseI	TTAA	4 cut(s)	354, 504, 719, 965
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	130, 544, 947
NdeII	GATC	2 cut(s)	151, 328
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	280, 589, 864, 950
NmuCI	GTSAC	1 cut(s)	1110
NspI	RCATGY	1 cut(s)	950
PaeR7I	CTCGAG	1 cut(s)	681
PctI	GAATGC	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	1010
PfeI	GAWTC	6 cut(s)	64, 82, 457, 509, 866, 874
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	193, 208, 325, 798
PleI	GAGTC	4 cut(s)	81, 629, 1043, 1075
PpsI	GAGTC	4 cut(s)	81, 629, 1043, 1075
Psp124BI	GAGCTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	413
PspPI	GGNCC	3 cut(s)	367, 449, 849
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	4 cut(s)	354, 504, 719, 965
SatI	GCNGC	4 cut(s)	192, 207, 324, 797
Sau3AI	GATC	2 cut(s)	151, 328
Sau96I	GGNCC	3 cut(s)	367, 449, 849
SchI	GAGTC	4 cut(s)	82, 630, 1043, 1076
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	389
SfaNI	GCATC	4 cut(s)	193, 242, 321, 1074
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	3 cut(s)	367, 449, 849
SlaI	CTCGAG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	681
SmoI	CTYRAG	1 cut(s)	681
SsiI	CCGC	3 cut(s)	324, 425, 591
SspI	AATATT	1 cut(s)	912
SspMI	CTAG	5 cut(s)	42, 125, 390, 564, 1032
SstI	GAGCTC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	2 cut(s)	452, 777
TaaI	ACNGT	2 cut(s)	343, 962
TaqI	TCGA	5 cut(s)	71, 76, 147, 682, 1014
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	6 cut(s)	64, 82, 457, 509, 866, 874
Tru1I	TTAA	4 cut(s)	354, 504, 719, 965
Tru9I	TTAA	4 cut(s)	354, 504, 719, 965
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	1110
TseI	GCWGC	3 cut(s)	191, 206, 796
Tsp45I	GTSAC	1 cut(s)	1110
TspDTI	ATGAA	5 cut(s)	192, 293, 785, 945, 1059
TspRI	CASTG	1 cut(s)	739
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	3 cut(s)	367, 449, 849
XapI	RAATTY	3 cut(s)	102, 686, 1121
XbaI	TCTAGA	1 cut(s)	1031
XceI	RCATGY	1 cut(s)	950
XhoI	CTCGAG	1 cut(s)	681
XmiI	GTMKAC	2 cut(s)	435, 624
XmnI	GAANNNNTTC	1 cut(s)	1010
XspI	CTAG	5 cut(s)	42, 125, 390, 564, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.