Rorug01G0196500

plastid-lipid-associated protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004403
Physical Location & Seq
Forward (+)
27536098 .. 27537471
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0196500.1

Sequence Viewer

Length: 924 bp
ATGTGCGACATGATAACAGATTTAGATAGGACTAAAATGCAAAAGGCCTGTGTATATGAAGCTATTTTCCAAGCAGTCGAACAAGGGATTCCCGAGTTCCGTATTCGTATATTCAAGACAAAACCAGAACTTGTGTGGAGCACAAATGAAAAAGGAAGGAGTATTTTTCATTATTCCATTGAACGTCGTCAAGAAAAAATTTATAGCCTTATATATGGGCTTCCTATGAAAGATGCATTTGCAACTCTTGTAGATACCTCCAACAATAACATGCTACAAATGGCAGCAATGTCTTCACCTTTTGGGCAGCTTACTCATATCACTGGTGCAGCTCTGAAAATGCAGAGGAAACTCCAATGGTTCAAGGAGGTAGAAACTACTGTGCCACCCCAATATCTGGAAAGTACAAATCTGACAGATTACAAGAGACCACGCAATTTATTTTTCGTGTACCACAAGAAGTCGGTGGAGGAGGGAGAAAAGTGGACGAAAGACACTGCAGGTTCTTGTTCTGTTGTAGGTGCACTTATTGTAACCATAATGTTTGCCGCCGCTTTCACAGTTCCTGGAGGAAATAATGGAGTTACAGGCTTTCCCATATTCGTTGAAGACAAGTTATTTAGTCTATTTATAATTTCAGATGCTGTATCACTGTTTTCTTCTACAACTTCATCATTGTTGTTTTTGGAAATCCTTAGATCACGGTATGCAGAAGAGGACTTCATCGTATCCTTGCCAAGAAAGATTTTAATAGGCCTTATGGCACTGTTTCTCTCTATTGCAATTTGCAACCATGATGCTAGCATTTTGCGCTGCCCTTATCGTTGTGCTTCGAGGAAAACCGTGGACTGTGTTTCCAGTTATTTCTCTTGCTATTGTTCCAGTGAGCTTATTTGCTTACATGAAAGTTCCACTCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

307

Amino Acids

34.75

Weight (kDa)

7.95

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 160 - 261 2.7e-20 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 397
AciI CCGC 2 cut(s) 549, 552
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 2 cut(s) 406, 452
AfiI CCNNNNNNNGG 1 cut(s) 397
AgsI TTSAA 4 cut(s) 115, 182, 364, 608
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 4 cut(s) 62, 310, 332, 889
AluI AGCT 4 cut(s) 62, 310, 332, 889
Alw21I GWGCWC 2 cut(s) 143, 526
Alw26I GTCTC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 522
AlwNI CAGNNNCTG 2 cut(s) 566, 644
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 2 cut(s) 45, 754
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 4 cut(s) 284, 307, 329, 813
ApoI RAATTY 1 cut(s) 198
AspLEI GCGC 1 cut(s) 813
AsuHPI GGTGA 1 cut(s) 288
AsuNHI GCTAGC 1 cut(s) 800
AvaI CYCGRG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 285, 615
Bbv12I GWGCWC 2 cut(s) 143, 526
BbvI GCAGC 4 cut(s) 296, 319, 341, 800
BciT130I CCWGG 1 cut(s) 567
BciVI GTATCC 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 491
BfuI GTATCC 1 cut(s) 739
BisI GCNGC 6 cut(s) 285, 308, 330, 549, 552, 814
BlsI GCNGC 6 cut(s) 286, 309, 331, 550, 553, 815
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 3 cut(s) 223, 631, 787
BmtI GCTAGC 1 cut(s) 804
BpiI GAAGAC 2 cut(s) 285, 615
BpmI CTGGAG 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 843
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 3 cut(s) 328, 858, 882
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 843
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 3 cut(s) 328, 858, 882
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 4 cut(s) 296, 319, 341, 800
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 2 cut(s) 47, 756
BsiHKAI GWGCWC 2 cut(s) 143, 526
BsiHKCI CYCGRG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 421
BsnI GGCC 2 cut(s) 47, 756
Bso31I GGTCTC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 143, 526
Bsp143I GATC 1 cut(s) 698
BspACI CCGC 2 cut(s) 549, 552
BspANI GGCC 2 cut(s) 47, 756
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 491
BspOI GCTAGC 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 3 cut(s) 328, 858, 882
BssECI CCNNGG 1 cut(s) 843
BssMI GATC 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 7 cut(s) 382, 562, 654, 705, 768, 844, 851
Bst6I CTCTTC 1 cut(s) 708
BstC8I GCNNGC 1 cut(s) 802
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 843
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 1 cut(s) 701
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 1 cut(s) 698
BstMWI GCNNNNNNNGC 1 cut(s) 810
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 526
BstV1I GCAGC 4 cut(s) 296, 319, 341, 800
BstV2I GAAGAC 2 cut(s) 285, 615
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 2 cut(s) 47, 756
BtgI CCRYGG 1 cut(s) 843
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 5 cut(s) 321, 495, 650, 764, 889
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 802
CaiI CAGNNNCTG 2 cut(s) 566, 644
CfoI GCGC 1 cut(s) 813
Csp6I GTAC 2 cut(s) 405, 451
CviAII CATG 4 cut(s) 10, 271, 794, 902
CviJI RGCY 9 cut(s) 47, 62, 207, 220, 310, 332, 591, 756, 889
CviKI_1 RGCY 9 cut(s) 47, 62, 207, 220, 310, 332, 591, 756, 889
CviQI GTAC 2 cut(s) 405, 451
DdeI CTNAG 1 cut(s) 695
DpnI GATC 1 cut(s) 700
DpnII GATC 1 cut(s) 698
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco147I AGGCCT 2 cut(s) 47, 756
Eco31I GGTCTC 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 4 cut(s) 13, 274, 797, 905
FatI CATG 4 cut(s) 9, 270, 793, 901
Fnu4HI GCNGC 6 cut(s) 285, 308, 330, 549, 552, 814
Fsp4HI GCNGC 6 cut(s) 285, 308, 330, 549, 552, 814
FspBI CTAG 1 cut(s) 801
GlaI GCGC 1 cut(s) 812
GluI GCNGC 6 cut(s) 285, 308, 330, 549, 552, 814
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 2 cut(s) 47, 756
HhaI GCGC 1 cut(s) 813
Hin1II CATG 4 cut(s) 13, 274, 797, 905
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HinfI GANTC 1 cut(s) 88
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 4 cut(s) 451, 486, 524, 847
Hpy188I TCNGA 3 cut(s) 336, 414, 640
Hpy188III TCNNGA 4 cut(s) 92, 115, 191, 398
Hpy8I GTNNAC 4 cut(s) 451, 486, 524, 847
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 7 cut(s) 382, 562, 654, 705, 768, 844, 851
HpyCH4IV ACGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 810
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 4 cut(s) 13, 274, 797, 905
HspAI GCGC 1 cut(s) 811
Kzo9I GATC 1 cut(s) 698
LmnI GCTCC 1 cut(s) 138
Lsp1109I GCAGC 4 cut(s) 296, 319, 341, 800
LweI GCATC 3 cut(s) 223, 631, 787
MaeI CTAG 1 cut(s) 801
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 532, 583
MalI GATC 1 cut(s) 700
MboI GATC 1 cut(s) 698
MboII GAAGA 4 cut(s) 285, 620, 651, 725
MhlI GDGCHC 2 cut(s) 143, 526
MluCI AATT 4 cut(s) 198, 436, 633, 783
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 8 cut(s) 268, 339, 361, 463, 466, 563, 709, 828
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 1 cut(s) 749
MspR9I CCNGG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 810
NdeII GATC 1 cut(s) 698
NheI GCTAGC 1 cut(s) 800
NlaIII CATG 4 cut(s) 13, 274, 797, 905
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 274
PceI AGGCCT 2 cut(s) 47, 756
PfeI GAWTC 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 397
PfoI TCCNGGA 1 cut(s) 565
PkrI GCNGC 6 cut(s) 286, 309, 331, 550, 553, 815
PsiI TTATAA 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 2 cut(s) 566, 644
RsaI GTAC 2 cut(s) 406, 452
RsaNI GTAC 2 cut(s) 405, 451
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 6 cut(s) 285, 308, 330, 549, 552, 814
Sau3AI GATC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 143, 526
SfaNI GCATC 3 cut(s) 223, 631, 787
SfcI CTRYAG 1 cut(s) 498
Sse9I AATT 4 cut(s) 198, 436, 633, 783
SseBI AGGCCT 2 cut(s) 47, 756
SsiI CCGC 2 cut(s) 549, 552
SspMI CTAG 1 cut(s) 801
StuI AGGCCT 2 cut(s) 47, 756
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 7 cut(s) 382, 562, 654, 705, 768, 844, 851
TaiI ACGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 78, 833
TasI AATT 4 cut(s) 198, 436, 633, 783
TatI WGTACW 1 cut(s) 404
TauI GCSGC 2 cut(s) 551, 554
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TscAI CASTG 5 cut(s) 328, 502, 657, 771, 889
TseI GCWGC 4 cut(s) 284, 307, 329, 813
TspDTI ATGAA 7 cut(s) 72, 158, 162, 242, 660, 712, 918
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 5 cut(s) 328, 502, 657, 771, 889
Van91I CCANNNNNTGG 1 cut(s) 397
VneI GTGCAC 1 cut(s) 522
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XspI CTAG 1 cut(s) 801
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.