Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004403

Physical Location & Seq

Genomic Coordinates Reverse (-)

19300268 .. 19304572

Gene Structure 4305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G135300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCACGTGTCTCCCGTTCGGCACCATCCCCTTCAAACCCCACTCCCCCCGCCCCGCTAAGATCACCTGCTCCTCCACGACAGCCCAATCACAGCTCGCCAAGCAGCACCTCCTCAGCCTCATCTCCGATCAGGACCGAGGCCTCAAGACCCAGAACAACCCCTTAAAGCTCACCTCAATCGTCAGCGCCATCGACGACTTGGCTGCTCTGGGAAAAGATAGTATCACCACCGGCGGGTCGCTGTCGGCCACTTGGCGGCTGCTCTGGACGACAGAGAAGGAGCAGCTCTTCATCATCCAGAACGCTTCCTTGTTCGGCACGCTAACCGGCGACGTTTTGCAGGTCATCGATGTTGAGCAAAGGGTTCTCAACAATGTCATCACTTTTCCTCCAGATGGGGTCTTCTTCGTCCGCTCTGACATCGCCGTCGCTTCAAAGCAGAGAGTCAATTTTAAATTTACAAGTGCGGTTCTACGAGGGAAGAATTGGGAGATTCCATTGCCACCGTTTGGGCAGGGTTGGTTTGACACTGTGTACCTTGATGATGAGATTCGAGTTGTGAAGGATATCAGAGGAGACTATTTGGTCGTGGACCGCGCTCCCTATGCTTGGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

208

Amino Acids

23.01

Weight (kDa)

7.75

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00030
fragaria_vesca	FvH4_7g10720 FvH4_7g10720 FvH4_7g10720
malus_domestica	MD07G1111900.v1.1
prunus_persica	Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1
pyrus_communis	pycom07g09700
rosa_chinensis	RchiOBHm_Chr1g0348671
rosa_laevigata	RLG00000028632
rosa_multiflora	Rmu_co8029388.1_g000001 Rmu_sc0019657.1_g000002 Rmu_sc0028436.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306850
rosa_rugosa	Rorug01G0196000 Rorug01G0196000 Rorug01G0196000 Rorug01G0196100 Rorug01G0196200 Rorug01G0196300 Rorug01G0196400 Rorug01G0196500 Rorug01G0196600
rosa_samantha	Rh1AG213900 Rh1BG180400 Rh1CG198600 Rh1DG210400
rosa_wichuraiana	Rw1G018120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
AasI	GACNNNNNNGTC	2 cut(s)	428, 587
Acc36I	ACCTGC	2 cut(s)	77, 334
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	1 cut(s)	600
AciI	CCGC	7 cut(s)	52, 57, 237, 259, 415, 470, 598
AcoI	YGGCCR	2 cut(s)	3, 249
AcsI	RAATTY	1 cut(s)	458
AcvI	CACGTG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	5 cut(s)	237, 258, 398, 512, 612
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	37, 438
AluBI	AGCT	3 cut(s)	97, 172, 289
AluI	AGCT	3 cut(s)	97, 172, 289
Alw26I	GTCTC	2 cut(s)	17, 573
AoxI	GGCC	3 cut(s)	3, 142, 249
ApeKI	GCWGC	4 cut(s)	106, 206, 262, 286
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	191, 602
AspS9I	GGNCC	2 cut(s)	136, 595
AsuHPI	GGTGA	3 cut(s)	58, 166, 220
AvaII	GGWCC	2 cut(s)	136, 595
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	397
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	118, 193, 249, 298
BccI	CCATC	3 cut(s)	35, 200, 392
BceAI	ACGGC	1 cut(s)	413
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BcoDI	GTCTC	2 cut(s)	17, 573
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	2 cut(s)	77, 334
BisI	GCNGC	5 cut(s)	107, 207, 260, 263, 287
BlsI	GCNGC	5 cut(s)	108, 208, 261, 264, 288
Bme18I	GGWCC	2 cut(s)	136, 595
BmgT120I	GGNCC	2 cut(s)	136, 595
BmiI	GGNNCC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	5 cut(s)	237, 258, 398, 512, 612
Bse118I	RCCGGY	2 cut(s)	233, 329
Bse3DI	GCAATG	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	27, 297
BseLI	CCNNNNNNNGG	5 cut(s)	237, 258, 398, 512, 612
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	130
BseRI	GAGGAG	3 cut(s)	64, 104, 591
BseXI	GCAGC	4 cut(s)	118, 193, 249, 298
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	5, 144, 251
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	234, 330
BslI	CCNNNNNNNGG	5 cut(s)	237, 258, 398, 512, 612
BsmAI	GTCTC	2 cut(s)	17, 573
BsnI	GGCC	3 cut(s)	5, 144, 251
Bsp143I	GATC	2 cut(s)	63, 130
BspACI	CCGC	7 cut(s)	52, 57, 237, 259, 415, 470, 598
BspANI	GGCC	3 cut(s)	5, 144, 251
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	25
BspMI	ACCTGC	2 cut(s)	77, 334
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	500
BsrFI	RCCGGY	2 cut(s)	233, 329
BssAI	RCCGGY	2 cut(s)	233, 329
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	63, 130
Bst4CI	ACNGT	2 cut(s)	510, 535
Bst6I	CTCTTC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	99, 323
BstDEI	CTNAG	2 cut(s)	60, 116
BstF5I	GGATG	2 cut(s)	27, 297
BstFNI	CGCG	1 cut(s)	600
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 602
BstKTI	GATC	2 cut(s)	66, 133
BstMAI	GTCTC	2 cut(s)	17, 573
BstMBI	GATC	2 cut(s)	63, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 608
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	118, 193, 249, 298
BstV2I	GAAGAC	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	5, 144, 251
BsuTUI	ATCGAT	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	27, 297
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	2 cut(s)	77, 334
Cac8I	GCNNGC	2 cut(s)	99, 323
CfoI	GCGC	2 cut(s)	191, 602
Cfr10I	RCCGGY	2 cut(s)	233, 329
Cfr13I	GGNCC	2 cut(s)	136, 595
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	538
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	2 cut(s)	60, 116
DpnI	GATC	2 cut(s)	65, 132
DpnII	GATC	2 cut(s)	63, 130
DraI	TTTAAA	1 cut(s)	457
DrdI	GACNNNNNNGTC	2 cut(s)	428, 587
DseDI	GACNNNNNNGTC	2 cut(s)	428, 587
EaeI	YGGCCR	2 cut(s)	3, 249
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	136, 595
Eco72I	CACGTG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	571
FaiI	YATR	1 cut(s)	609
FauI	CCCGC	3 cut(s)	59, 64, 230
Fnu4HI	GCNGC	5 cut(s)	107, 207, 260, 263, 287
FokI	GGATG	2 cut(s)	14, 284
Fsp4HI	GCNGC	5 cut(s)	107, 207, 260, 263, 287
GlaI	GCGC	2 cut(s)	190, 601
GluI	GCNGC	5 cut(s)	107, 207, 260, 263, 287
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	5, 144, 251
HapII	CCGG	2 cut(s)	234, 330
HhaI	GCGC	2 cut(s)	191, 602
Hin6I	GCGC	2 cut(s)	189, 600
HinP1I	GCGC	2 cut(s)	189, 600
HinfI	GANTC	3 cut(s)	447, 496, 553
HpaII	CCGG	2 cut(s)	234, 330
HphI	GGTGA	3 cut(s)	58, 166, 220
Hpy166II	GTNNAC	2 cut(s)	538, 595
Hpy188I	TCNGA	3 cut(s)	130, 421, 575
Hpy188III	TCNNGA	5 cut(s)	134, 148, 268, 301, 395
Hpy8I	GTNNAC	2 cut(s)	538, 595
Hpy99I	CGWCG	3 cut(s)	200, 338, 434
HpyAV	CCTTC	3 cut(s)	43, 274, 559
HpyCH4III	ACNGT	2 cut(s)	510, 535
HpyCH4IV	ACGT	2 cut(s)	8, 336
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 608
HpyF3I	CTNAG	2 cut(s)	60, 116
HpySE526I	ACGT	2 cut(s)	8, 336
HspAI	GCGC	2 cut(s)	189, 600
Kzo9I	GATC	2 cut(s)	63, 130
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	77, 283, 607
Lsp1109I	GCAGC	4 cut(s)	118, 193, 249, 298
MaeII	ACGT	2 cut(s)	8, 336
MalI	GATC	2 cut(s)	65, 132
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	2 cut(s)	63, 130
MboII	GAAGA	4 cut(s)	283, 397, 400, 496
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	451, 458, 487
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	456
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	167, 456
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	234, 330
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	103, 608
NdeII	GATC	2 cut(s)	63, 130
NlaIV	GGNNCC	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	496, 553
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	108, 208, 261, 264, 288
PleI	GAGTC	1 cut(s)	455
PmaCI	CACGTG	1 cut(s)	9
PmlI	CACGTG	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	9
PspCI	CACGTG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	136, 595
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	167, 456
SatI	GCNGC	5 cut(s)	107, 207, 260, 263, 287
Sau3AI	GATC	2 cut(s)	63, 130
Sau96I	GGNCC	2 cut(s)	136, 595
SchI	GAGTC	1 cut(s)	456
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	136, 595
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	451, 458, 487
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	7 cut(s)	52, 57, 237, 259, 415, 470, 598
StuI	AGGCCT	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	510, 535
TaiI	ACGT	2 cut(s)	11, 339
TaqI	TCGA	3 cut(s)	195, 351, 556
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	451, 458, 487
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	496, 553
Tru1I	TTAA	2 cut(s)	167, 456
Tru9I	TTAA	2 cut(s)	167, 456
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	4 cut(s)	106, 206, 262, 286
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	136, 595
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.