Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8029388.1

Orthogroup ID

OG0004403

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 425

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8029388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

cctcctcctcctcccgccccgctaaaatcacctgctcctccgtcaccgcccaatcccgcctcgccaagcaagacctcctcgccctcatcgccgaccaggaccgcggcctcaagacccagaccgaccccaccaaacgcgcctccatcatcaaggccatcgacgccctggccgatctcggcaacggtaccgtcaccaccggcagcgacctctccgccacgtggcggcttctgtggacgaccgagaaggagcagctcttcatcatccagaacgcgtccgtgttcggcacgcgcgccggcgacgttttgcaggtaatcgatgttgaccggaaggtcctcaacaatgtcatcactttccctcccgatggtgtcttctttgttcgctccaccatcgaagtcgcttcgccgcagagagtgaattttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

140

Amino Acids

15.23

Weight (kDa)

9.35

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00030
fragaria_vesca	FvH4_7g10720 FvH4_7g10720 FvH4_7g10720
malus_domestica	MD07G1111900.v1.1
prunus_persica	Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1
pyrus_communis	pycom07g09700
rosa_chinensis	RchiOBHm_Chr1g0348671
rosa_laevigata	RLG00000028632
rosa_multiflora	Rmu_co8029388.1_g000001 Rmu_sc0019657.1_g000002 Rmu_sc0028436.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306850
rosa_rugosa	Rorug01G0196000 Rorug01G0196000 Rorug01G0196000 Rorug01G0196100 Rorug01G0196200 Rorug01G0196300 Rorug01G0196400 Rorug01G0196500 Rorug01G0196600
rosa_samantha	Rh1AG213900 Rh1BG180400 Rh1CG198600 Rh1DG210400
rosa_wichuraiana	Rw1G018120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc36I	ACCTGC	2 cut(s)	40, 297
Acc65I	GGTACC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	5 cut(s)	104, 137, 271, 288, 290
AciI	CCGC	9 cut(s)	15, 20, 47, 57, 102, 104, 212, 222, 403
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	414
AcvI	CACGTG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	3 cut(s)	218, 221, 361
AflIII	ACRYGT	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	95, 164
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
AoxI	GGCC	3 cut(s)	105, 152, 167
ApeKI	GCWGC	2 cut(s)	200, 249
ApoI	RAATTY	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	184
AspLEI	GCGC	3 cut(s)	139, 290, 292
AspS9I	GGNCC	2 cut(s)	99, 330
AsuHPI	GGTGA	3 cut(s)	21, 36, 183
AvaII	GGWCC	2 cut(s)	99, 330
BanI	GGYRCC	1 cut(s)	184
BbrPI	CACGTG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	212, 261
BccI	CCATC	4 cut(s)	151, 163, 355, 394
BciT130I	CCWGG	2 cut(s)	97, 166
BfuAI	ACCTGC	2 cut(s)	40, 297
BisI	GCNGC	5 cut(s)	105, 201, 223, 250, 403
BlsI	GCNGC	5 cut(s)	106, 202, 224, 251, 404
Bme1390I	CCNGG	2 cut(s)	97, 166
Bme18I	GGWCC	2 cut(s)	99, 330
BmgT120I	GGNCC	2 cut(s)	99, 330
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	97, 166
BpiI	GAAGAC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	102, 164
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 221, 361
Bse118I	RCCGGY	2 cut(s)	196, 292
BseBI	CCWGG	2 cut(s)	97, 166
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	102, 164
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	3 cut(s)	218, 221, 361
BsePI	GCGCGC	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	27, 67
BseXI	GCAGC	2 cut(s)	212, 261
Bsh1236I	CGCG	5 cut(s)	104, 137, 271, 288, 290
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	107, 154, 169
BshNI	GGYRCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	197, 293, 324
BslI	CCNNNNNNNGG	3 cut(s)	218, 221, 361
BsnI	GGCC	3 cut(s)	107, 154, 169
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	9 cut(s)	15, 20, 47, 57, 102, 104, 212, 222, 403
BspANI	GGCC	3 cut(s)	107, 154, 169
BspDI	ATCGAT	1 cut(s)	314
BspFNI	CGCG	5 cut(s)	104, 137, 271, 288, 290
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	2 cut(s)	40, 297
BspQI	GCTCTTC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	196, 292
BssAI	RCCGGY	2 cut(s)	196, 292
BssECI	CCNNGG	2 cut(s)	102, 164
BssHII	GCGCGC	1 cut(s)	288
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	97, 166
Bst4CI	ACNGT	2 cut(s)	184, 189
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	286, 290, 294
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	260
BstFNI	CGCG	5 cut(s)	104, 137, 271, 288, 290
BstHHI	GCGC	3 cut(s)	139, 290, 292
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 160
BstNI	CCWGG	2 cut(s)	97, 166
BstSCI	CCNGG	2 cut(s)	95, 164
BstUI	CGCG	5 cut(s)	104, 137, 271, 288, 290
BstV1I	GCAGC	2 cut(s)	212, 261
BstV2I	GAAGAC	1 cut(s)	360
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	107, 154, 169
BsuTUI	ATCGAT	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	260
BveI	ACCTGC	2 cut(s)	40, 297
Cac8I	GCNNGC	3 cut(s)	286, 290, 294
CfoI	GCGC	3 cut(s)	139, 290, 292
Cfr10I	RCCGGY	2 cut(s)	196, 292
Cfr13I	GGNCC	2 cut(s)	99, 330
Cfr42I	CCGCGG	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	2 cut(s)	169, 260
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	5 cut(s)	107, 154, 169, 225, 252
CviKI_1	RGCY	5 cut(s)	107, 154, 169, 225, 252
CviQI	GTAC	1 cut(s)	185
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	99, 330
Eco72I	CACGTG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	95, 164
FauI	CCCGC	3 cut(s)	22, 27, 64
Fnu4HI	GCNGC	5 cut(s)	105, 201, 223, 250, 403
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	5 cut(s)	105, 201, 223, 250, 403
GlaI	GCGC	3 cut(s)	138, 289, 291
GluI	GCNGC	5 cut(s)	105, 201, 223, 250, 403
HaeIII	GGCC	3 cut(s)	107, 154, 169
HapII	CCGG	3 cut(s)	197, 293, 324
HgaI	GACGC	2 cut(s)	169, 260
HhaI	GCGC	3 cut(s)	139, 290, 292
Hin1I	GRCGYC	1 cut(s)	161
Hin6I	GCGC	3 cut(s)	137, 288, 290
HinP1I	GCGC	3 cut(s)	137, 288, 290
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HpaII	CCGG	3 cut(s)	197, 293, 324
HphI	GGTGA	3 cut(s)	21, 36, 183
Hpy166II	GTNNAC	2 cut(s)	233, 321
Hpy188III	TCNNGA	3 cut(s)	111, 264, 358
Hpy8I	GTNNAC	2 cut(s)	233, 321
Hpy99I	CGWCG	2 cut(s)	163, 301
HpyAV	CCTTC	2 cut(s)	237, 321
HpyCH4III	ACNGT	2 cut(s)	184, 189
HpyCH4IV	ACGT	2 cut(s)	217, 299
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 160
HpySE526I	ACGT	2 cut(s)	217, 299
Hsp92I	GRCGYC	1 cut(s)	161
HspAI	GCGC	3 cut(s)	137, 288, 290
KpnI	GGTACC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	3 cut(s)	40, 246, 385
Lsp1109I	GCAGC	2 cut(s)	212, 261
MaeII	ACGT	2 cut(s)	217, 299
MaeIII	GTNAC	2 cut(s)	42, 189
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	246, 360
MluCI	AATT	1 cut(s)	414
MluI	ACGCGT	1 cut(s)	269
MreI	CGCCGGCG	1 cut(s)	292
MroNI	GCCGGC	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	197, 293, 324
MspR9I	CCNGG	2 cut(s)	97, 166
MvaI	CCWGG	2 cut(s)	97, 166
MvnI	CGCG	5 cut(s)	104, 137, 271, 288, 290
MwoI	GCNNNNNNNGC	2 cut(s)	88, 160
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	1 cut(s)	171
NgoMIV	GCCGGC	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	42, 189
PaqCI	CACCTGC	1 cut(s)	40
PauI	GCGCGC	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	106, 202, 224, 251, 404
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	95, 164
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	95, 164
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	99, 330
PspPPI	RGGWCCY	1 cut(s)	330
PteI	GCGCGC	1 cut(s)	288
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SacII	CCGCGG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	259
SatI	GCNGC	5 cut(s)	105, 201, 223, 250, 403
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	99, 330
ScrFI	CCNGG	2 cut(s)	97, 166
SetI	ASST	9 cut(s)	34, 77, 209, 220, 254, 302, 311, 332, 424
Sfr303I	CCGCGG	1 cut(s)	105
SgrAI	CRCCGGYG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	99, 330
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	9 cut(s)	15, 20, 47, 57, 102, 104, 212, 222, 403
StyD4I	CCNGG	2 cut(s)	95, 164
TaaI	ACNGT	2 cut(s)	184, 189
TaiI	ACGT	2 cut(s)	220, 302
TaqI	TCGA	3 cut(s)	158, 314, 389
TaqII	GACCGA	2 cut(s)	136, 253
TasI	AATT	1 cut(s)	414
TauI	GCSGC	3 cut(s)	107, 225, 405
TseFI	GTSAC	2 cut(s)	42, 189
TseI	GCWGC	2 cut(s)	200, 249
Tsp45I	GTSAC	2 cut(s)	42, 189
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	2 cut(s)	30, 264
VpaK11BI	GGWCC	2 cut(s)	99, 330
XapI	RAATTY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.