Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028436.1

Orthogroup ID

OG0004403

Physical Location & Seq

Genomic Coordinates Forward (+)

928 .. 1398

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggccacgtgtctccccttccgctccatccccttcaaacccaacacctcctcctcctcccgccccgctaaaatcacctgctcctccgtcaccgcccaatcccgcctcgccaagcaagacctcctcgccctcatcgccgaccaggaccgcggcctcaagacccagaccgaccccaccaaacgcgcctccatcatcaaggccatcgacgccctggccgatctcggcaacggtaccgtcaccaccggcagcgacctctccgccacgtggcggcttctgtggacgaccgagaaggagcagctcttcatcatccagaacgcgtccgtgttcggcacgcgcgccggcgacgttttgcaggtaatcgatgttgaccggaaggtcctcaacaatgtcatcactttccctcccgatggtgtcttctttgttcgctccaccatcgaagtcgcttcgccgcagagagtgaattttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

156

Amino Acids

17.04

Weight (kDa)

9.62

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00030
fragaria_vesca	FvH4_7g10720 FvH4_7g10720 FvH4_7g10720
malus_domestica	MD07G1111900.v1.1
prunus_persica	Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1 Prupe.2G135300_v2.0.a1
pyrus_communis	pycom07g09700
rosa_chinensis	RchiOBHm_Chr1g0348671
rosa_laevigata	RLG00000028632
rosa_multiflora	Rmu_co8029388.1_g000001 Rmu_sc0019657.1_g000002 Rmu_sc0028436.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306850
rosa_rugosa	Rorug01G0196000 Rorug01G0196000 Rorug01G0196000 Rorug01G0196100 Rorug01G0196200 Rorug01G0196300 Rorug01G0196400 Rorug01G0196500 Rorug01G0196600
rosa_samantha	Rh1AG213900 Rh1BG180400 Rh1CG198600 Rh1DG210400
rosa_wichuraiana	Rw1G018120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc36I	ACCTGC	2 cut(s)	86, 343
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	24
AccII	CGCG	5 cut(s)	150, 183, 317, 334, 336
AcoI	YGGCCR	2 cut(s)	3, 213
AcsI	RAATTY	1 cut(s)	460
AcvI	CACGTG	2 cut(s)	9, 264
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	3 cut(s)	264, 267, 407
AflIII	ACRYGT	2 cut(s)	8, 315
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	141, 210
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	4 cut(s)	3, 151, 198, 213
ApeKI	GCWGC	2 cut(s)	246, 295
ApoI	RAATTY	1 cut(s)	460
Asp718I	GGTACC	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	185, 336, 338
AspS9I	GGNCC	2 cut(s)	145, 376
AsuHPI	GGTGA	3 cut(s)	67, 82, 229
AvaII	GGWCC	2 cut(s)	145, 376
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	230
BbrPI	CACGTG	2 cut(s)	9, 264
BbsI	GAAGAC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	258, 307
BccI	CCATC	5 cut(s)	35, 197, 209, 401, 440
BciT130I	CCWGG	2 cut(s)	143, 212
BcoDI	GTCTC	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	86, 343
BisI	GCNGC	5 cut(s)	151, 247, 269, 296, 449
BlsI	GCNGC	5 cut(s)	152, 248, 270, 297, 450
Bme1390I	CCNGG	2 cut(s)	143, 212
Bme18I	GGWCC	2 cut(s)	145, 376
BmgT120I	GGNCC	2 cut(s)	145, 376
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	143, 212
BpiI	GAAGAC	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	360
BsaAI	YACGTR	2 cut(s)	9, 264
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	148, 210
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 267, 407
Bse118I	RCCGGY	2 cut(s)	242, 338
BseBI	CCWGG	2 cut(s)	143, 212
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	148, 210
BseGI	GGATG	2 cut(s)	27, 306
BseLI	CCNNNNNNNGG	3 cut(s)	264, 267, 407
BsePI	GCGCGC	1 cut(s)	334
BseRI	GAGGAG	5 cut(s)	40, 43, 46, 73, 113
BseXI	GCAGC	2 cut(s)	258, 307
Bsh1236I	CGCG	5 cut(s)	150, 183, 317, 334, 336
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	4 cut(s)	5, 153, 200, 215
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	243, 339, 370
BslI	CCNNNNNNNGG	3 cut(s)	264, 267, 407
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	4 cut(s)	5, 153, 200, 215
Bsp143I	GATC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	5, 153, 200, 215
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	5 cut(s)	150, 183, 317, 334, 336
BspLI	GGNNCC	1 cut(s)	232
BspMI	ACCTGC	2 cut(s)	86, 343
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	242, 338
BssAI	RCCGGY	2 cut(s)	242, 338
BssECI	CCNNGG	2 cut(s)	148, 210
BssHII	GCGCGC	1 cut(s)	334
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	143, 212
Bst4CI	ACNGT	2 cut(s)	230, 235
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	207
BstBAI	YACGTR	2 cut(s)	9, 264
BstC8I	GCNNGC	3 cut(s)	332, 336, 340
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	27, 306
BstFNI	CGCG	5 cut(s)	150, 183, 317, 334, 336
BstHHI	GCGC	3 cut(s)	185, 336, 338
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 206
BstNI	CCWGG	2 cut(s)	143, 212
BstSCI	CCNGG	2 cut(s)	141, 210
BstUI	CGCG	5 cut(s)	150, 183, 317, 334, 336
BstV1I	GCAGC	2 cut(s)	258, 307
BstV2I	GAAGAC	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	5, 153, 200, 215
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	27, 306
BveI	ACCTGC	2 cut(s)	86, 343
Cac8I	GCNNGC	3 cut(s)	332, 336, 340
CfoI	GCGC	3 cut(s)	185, 336, 338
Cfr10I	RCCGGY	2 cut(s)	242, 338
Cfr13I	GGNCC	2 cut(s)	145, 376
Cfr42I	CCGCGG	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	2 cut(s)	215, 306
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	6 cut(s)	5, 153, 200, 215, 271, 298
CviKI_1	RGCY	6 cut(s)	5, 153, 200, 215, 271, 298
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	3, 213
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	145, 376
Eco72I	CACGTG	2 cut(s)	9, 264
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	141, 210
FauI	CCCGC	3 cut(s)	68, 73, 110
Fnu4HI	GCNGC	5 cut(s)	151, 247, 269, 296, 449
FokI	GGATG	2 cut(s)	14, 293
Fsp4HI	GCNGC	5 cut(s)	151, 247, 269, 296, 449
GlaI	GCGC	3 cut(s)	184, 335, 337
GluI	GCNGC	5 cut(s)	151, 247, 269, 296, 449
HaeIII	GGCC	4 cut(s)	5, 153, 200, 215
HapII	CCGG	3 cut(s)	243, 339, 370
HgaI	GACGC	2 cut(s)	215, 306
HhaI	GCGC	3 cut(s)	185, 336, 338
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	3 cut(s)	183, 334, 336
HinP1I	GCGC	3 cut(s)	183, 334, 336
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HpaII	CCGG	3 cut(s)	243, 339, 370
HphI	GGTGA	3 cut(s)	67, 82, 229
Hpy166II	GTNNAC	2 cut(s)	279, 367
Hpy188III	TCNNGA	3 cut(s)	157, 310, 404
Hpy8I	GTNNAC	2 cut(s)	279, 367
Hpy99I	CGWCG	2 cut(s)	209, 347
HpyAV	CCTTC	4 cut(s)	28, 43, 283, 367
HpyCH4III	ACNGT	2 cut(s)	230, 235
HpyCH4IV	ACGT	3 cut(s)	8, 263, 345
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 206
HpySE526I	ACGT	3 cut(s)	8, 263, 345
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	3 cut(s)	183, 334, 336
KpnI	GGTACC	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	338
KroNI	GCCGGC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	4 cut(s)	29, 86, 292, 431
Lsp1109I	GCAGC	2 cut(s)	258, 307
MaeII	ACGT	3 cut(s)	8, 263, 345
MaeIII	GTNAC	2 cut(s)	88, 235
MalI	GATC	1 cut(s)	219
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	292, 406
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	460
MluI	ACGCGT	1 cut(s)	315
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	3 cut(s)	243, 339, 370
MspR9I	CCNGG	2 cut(s)	143, 212
MvaI	CCWGG	2 cut(s)	143, 212
MvnI	CGCG	5 cut(s)	150, 183, 317, 334, 336
MwoI	GCNNNNNNNGC	2 cut(s)	134, 206
NaeI	GCCGGC	1 cut(s)	340
NdeII	GATC	1 cut(s)	217
NgoMIV	GCCGGC	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	88, 235
PaqCI	CACCTGC	1 cut(s)	86
PauI	GCGCGC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	152, 248, 270, 297, 450
PmaCI	CACGTG	2 cut(s)	9, 264
PmlI	CACGTG	2 cut(s)	9, 264
Ppu21I	YACGTR	2 cut(s)	9, 264
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	141, 210
PspCI	CACGTG	2 cut(s)	9, 264
PspGI	CCWGG	2 cut(s)	141, 210
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	145, 376
PspPPI	RGGWCCY	1 cut(s)	376
PteI	GCGCGC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	5 cut(s)	151, 247, 269, 296, 449
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	145, 376
ScrFI	CCNGG	2 cut(s)	143, 212
Sfr303I	CCGCGG	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	338
SgrBI	CCGCGG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	145, 376
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	141, 210
TaaI	ACNGT	2 cut(s)	230, 235
TaiI	ACGT	3 cut(s)	11, 266, 348
TaqI	TCGA	3 cut(s)	204, 360, 435
TaqII	GACCGA	2 cut(s)	182, 299
TasI	AATT	1 cut(s)	460
TauI	GCSGC	3 cut(s)	153, 271, 451
TseFI	GTSAC	2 cut(s)	88, 235
TseI	GCWGC	2 cut(s)	246, 295
Tsp45I	GTSAC	2 cut(s)	88, 235
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	2 cut(s)	76, 310
VpaK11BI	GGWCC	2 cut(s)	145, 376
XapI	RAATTY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.