AT4G00755

F-box family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005803
Physical Location & Seq
Forward (+)
324925 .. 327008
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00755.1

Sequence Viewer

Length: 1134 bp
ATGGATTTCGTGAACAATCTTGATACCGACACGTCGCTATCAATTCTCTCTTGTCTAGATGATCCATCAGATATTGTCCGTGCCAGTGCTGTCTCACGCTCCTGGCGACAATTTGTGGTTAAGTATAGTCTCTCCAAGAATCTATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAATTGAAACAAGTAATGATAGAAATGGAGAGTCATCTGAAGCTGGGTCAAGCAGTCTCATGGATACAAGGCTACTTGAAAAAGAGCACCGGGCTTTTGCCTTGTTGGCTAGAGGGTGCATGTCTTCACCTATTGAAAGCTGTATAGCTGATGCCATTAGAGCTTCCAGTACTGATAATTACCCAGTAGAAAGCATCTTAAACACACTCGAGAAGAGAGATCGGATTGGTCGAACCCCTTCTTATTGGTCGAGTACTGGGCAACACAAAACTACGGTGCCCGAATCACTTCTTTACAAGTTGATTGGTGATTTGTGTCTCATTACTGAAGTCAGCATCCATCCTTTCCAAGCTTATTTTCAGCGCGGTCATCCGATATACTCTTCACATTATGTTCGTTTCCGGTTGGGTCACGAAAAGGACAATTCACCTCACTACAACAATTCACAGGATAAAAAAGGTGAGCCAGGAAAGAGTTCAATTGAAAGCAACTATGTATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAGTTCAGACACAAGAAATGGATGGCCAATACTATATATGCGTGTCACATGTCAAAGTGGAGGGAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGATTGAAGGTGTTGAGTTACAATGATCCGAAAAAAATGGAGGAGATGGATGCAGAGGCCGGGCAGGACATGGATGCAGAGGCGGGCCAAAGTCAGCTGAGAAACCTTGAACAGCTCTTGAATTTGTTGCACAGGCATCCTCTCGATGTTGTCGACTATGTTTGGCCTGATGAGTCAGACGACGAGTATGCTGAATCAGAAGATGAGGCTGAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

377

Amino Acids

42.77

Weight (kDa)

4.93

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 50 3.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 1068
AccII CGCG 1 cut(s) 549
AciI CCGC 2 cut(s) 549, 998
AclWI GGATC 3 cut(s) 56, 186, 935
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 1 cut(s) 1036
AcuI CTGAAG 2 cut(s) 243, 531
AfaI GTAC 2 cut(s) 355, 439
AflIII ACRYGT 2 cut(s) 30, 844
AgsI TTSAA 9 cut(s) 151, 191, 263, 320, 663, 668, 922, 1025, 1036
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 2 cut(s) 101, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 4 cut(s) 97, 134, 245, 506
AlwI GGATC 3 cut(s) 56, 186, 935
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 820, 972, 1000, 1079
ApoI RAATTY 1 cut(s) 1036
Asp700I GAANNNNTTC 5 cut(s) 155, 421, 471, 658, 753
AspLEI GCGC 1 cut(s) 549
AspS9I GGNCC 1 cut(s) 1000
AsuC2I CCSGG 2 cut(s) 275, 976
AsuHPI GGTGA 4 cut(s) 303, 503, 603, 656
AvaI CYCGRG 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 822
BanI GGYRCC 1 cut(s) 460
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 6 cut(s) 73, 168, 531, 703, 812, 955
BcgI CGANNNNNNTGC 2 cut(s) 1085, 1119
BciT130I CCWGG 2 cut(s) 103, 651
BciVI GTATCC 1 cut(s) 241
BcnI CCSGG 2 cut(s) 275, 976
BcoDI GTCTC 4 cut(s) 97, 134, 245, 506
BfaI CTAG 5 cut(s) 56, 294, 779, 791, 869
BfuI GTATCC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 290
BglII AGATCT 1 cut(s) 863
BlpI GCTNAGC 1 cut(s) 1125
BmcAI AGTACT 2 cut(s) 355, 439
Bme1390I CCNGG 4 cut(s) 103, 275, 651, 976
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 1000
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 4 cut(s) 103, 275, 651, 976
BmrI ACTGGG 2 cut(s) 362, 450
BmsI GCATC 6 cut(s) 325, 387, 528, 955, 979, 1060
BmuI ACTGGG 2 cut(s) 362, 450
BpiI GAAGAC 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 1125
BpuMI CCSGG 2 cut(s) 275, 976
Bsa29I ATCGAT 1 cut(s) 724
BsaWI WCCGGW 1 cut(s) 585
Bse1I ACTGG 4 cut(s) 84, 351, 368, 445
BseBI CCWGG 2 cut(s) 103, 651
BseCI ATCGAT 1 cut(s) 724
BseGI GGATG 8 cut(s) 519, 523, 553, 823, 904, 970, 994, 1051
BseMII CTCAG 3 cut(s) 728, 1004, 1116
BseNI ACTGG 4 cut(s) 84, 351, 368, 445
BseRI GAGGAG 1 cut(s) 971
BseSI GKGCMC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 4 cut(s) 822, 974, 1002, 1081
BshNI GGYRCC 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 274, 586, 975
BsmAI GTCTC 4 cut(s) 97, 134, 245, 506
BsnI GGCC 4 cut(s) 822, 974, 1002, 1081
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 273, 465
Bsp143I GATC 5 cut(s) 61, 178, 403, 863, 940
Bsp1720I GCTNAGC 1 cut(s) 1125
BspACI CCGC 2 cut(s) 549, 998
BspANI GGCC 4 cut(s) 822, 974, 1002, 1081
BspCNI CTCAG 3 cut(s) 727, 1005, 1117
BspDI ATCGAT 1 cut(s) 724
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 3 cut(s) 56, 186, 935
BspT107I GGYRCC 1 cut(s) 460
BsrI ACTGG 4 cut(s) 84, 351, 368, 445
BssMI GATC 5 cut(s) 61, 178, 403, 863, 940
Bst2UI CCWGG 2 cut(s) 103, 651
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 2 cut(s) 392, 571
BstC8I GCNNGC 1 cut(s) 1000
BstDEI CTNAG 4 cut(s) 714, 1013, 1125, 1131
BstF5I GGATG 8 cut(s) 519, 523, 553, 823, 904, 970, 994, 1051
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 5 cut(s) 64, 181, 406, 866, 943
BstMAI GTCTC 4 cut(s) 97, 134, 245, 506
BstMBI GATC 5 cut(s) 61, 178, 403, 863, 940
BstMWI GCNNNNNNNGC 2 cut(s) 290, 344
BstNI CCWGG 2 cut(s) 103, 651
BstNSI RCATGY 2 cut(s) 307, 848
BstSCI CCNGG 4 cut(s) 101, 273, 649, 974
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 1 cut(s) 549
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 863
BstYI RGATCY 1 cut(s) 863
Bsu15I ATCGAT 1 cut(s) 724
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 4 cut(s) 822, 974, 1002, 1081
BsuTUI ATCGAT 1 cut(s) 724
BtrI CACGTC 1 cut(s) 33
BtsCI GGATG 8 cut(s) 519, 523, 553, 823, 904, 970, 994, 1051
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 1000
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 1000
ClaI ATCGAT 1 cut(s) 724
Csp6I GTAC 2 cut(s) 354, 438
CviAII CATG 4 cut(s) 244, 304, 845, 985
CviQI GTAC 2 cut(s) 354, 438
DdeI CTNAG 4 cut(s) 714, 1013, 1125, 1131
DpnI GATC 5 cut(s) 63, 180, 405, 865, 942
DpnII GATC 5 cut(s) 61, 178, 403, 863, 940
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 392, 571
EarI CTCTTC 2 cut(s) 392, 571
Eco57I CTGAAG 2 cut(s) 243, 531
Eco88I CYCGRG 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 101, 649
FaeI CATG 4 cut(s) 247, 307, 848, 988
FatI CATG 4 cut(s) 243, 303, 844, 984
FauI CCCGC 1 cut(s) 991
FblI GTMKAC 1 cut(s) 1068
FokI GGATG 8 cut(s) 506, 510, 540, 830, 911, 977, 1001, 1038
FspBI CTAG 5 cut(s) 56, 294, 779, 791, 869
GlaI GCGC 1 cut(s) 548
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 4 cut(s) 822, 974, 1002, 1081
HapII CCGG 3 cut(s) 274, 586, 975
HhaI GCGC 1 cut(s) 549
Hin1II CATG 4 cut(s) 247, 307, 848, 988
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 5 cut(s) 139, 215, 467, 1088, 1109
HpaII CCGG 3 cut(s) 274, 586, 975
HphI GGTGA 4 cut(s) 303, 503, 603, 656
Hpy166II GTNNAC 2 cut(s) 13, 1069
Hpy188I TCNGA 8 cut(s) 70, 223, 408, 558, 804, 945, 1093, 1114
Hpy188III TCNNGA 9 cut(s) 10, 20, 56, 394, 596, 716, 746, 1033, 1058
Hpy8I GTNNAC 2 cut(s) 13, 1069
Hpy99I CGWCG 2 cut(s) 37, 1100
HpyAV CCTTC 2 cut(s) 432, 916
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 6 cut(s) 303, 730, 762, 968, 992, 1045
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 344
HpyF3I CTNAG 4 cut(s) 714, 1013, 1125, 1131
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 4 cut(s) 247, 307, 848, 988
HspAI GCGC 1 cut(s) 547
Kzo9I GATC 5 cut(s) 61, 178, 403, 863, 940
LmnI GCTCC 1 cut(s) 104
LweI GCATC 6 cut(s) 325, 387, 528, 955, 979, 1060
MaeI CTAG 5 cut(s) 56, 294, 779, 791, 869
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 593, 840, 932
MalI GATC 5 cut(s) 63, 180, 405, 865, 942
MboI GATC 5 cut(s) 61, 178, 403, 863, 940
MboII GAAGA 5 cut(s) 300, 409, 558, 873, 1127
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 863
MhlI GDGCHC 2 cut(s) 273, 465
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 8 cut(s) 42, 110, 186, 361, 607, 625, 663, 1036
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 2 cut(s) 224, 1097
MnlI CCTC 8 cut(s) 290, 624, 850, 949, 964, 988, 1065, 1114
Mox20I TGGCCA 1 cut(s) 822
MroXI GAANNNNTTC 5 cut(s) 155, 421, 471, 658, 753
MscI TGGCCA 1 cut(s) 822
MseI TTAA 2 cut(s) 120, 383
Msp20I TGGCCA 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 1012
MspI CCGG 3 cut(s) 274, 586, 975
MspR9I CCNGG 4 cut(s) 103, 275, 651, 976
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 2 cut(s) 103, 651
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 290, 344
NciI CCSGG 2 cut(s) 275, 976
NdeII GATC 5 cut(s) 61, 178, 403, 863, 940
NlaIII CATG 4 cut(s) 247, 307, 848, 988
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 593, 840
NspI RCATGY 2 cut(s) 307, 848
PaeR7I CTCGAG 1 cut(s) 392
PciI ACATGT 1 cut(s) 844
PcsI WCGNNNNNNNCGW 3 cut(s) 103, 412, 1065
PdmI GAANNNNTTC 5 cut(s) 155, 421, 471, 658, 753
PfeI GAWTC 3 cut(s) 139, 467, 1109
PleI GAGTC 2 cut(s) 223, 1096
PpsI GAGTC 2 cut(s) 223, 1096
PscI ACATGT 1 cut(s) 844
Psp6I CCWGG 2 cut(s) 101, 649
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 101, 649
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 1000
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 863
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 2 cut(s) 355, 439
RsaNI GTAC 2 cut(s) 354, 438
SalI GTCGAC 1 cut(s) 1067
SaqAI TTAA 2 cut(s) 120, 383
Sau3AI GATC 5 cut(s) 61, 178, 403, 863, 940
Sau96I GGNCC 1 cut(s) 1000
ScaI AGTACT 2 cut(s) 355, 439
SchI GAGTC 2 cut(s) 224, 1097
ScrFI CCNGG 4 cut(s) 103, 275, 651, 976
SduI GDGCHC 2 cut(s) 273, 465
SfaNI GCATC 6 cut(s) 325, 387, 528, 955, 979, 1060
Sfr274I CTCGAG 1 cut(s) 392
SlaI CTCGAG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 8 cut(s) 42, 110, 186, 361, 607, 625, 663, 1036
SsiI CCGC 2 cut(s) 549, 998
SspMI CTAG 5 cut(s) 56, 294, 779, 791, 869
StyD4I CCNGG 4 cut(s) 101, 273, 649, 974
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 35
TasI AATT 8 cut(s) 42, 110, 186, 361, 607, 625, 663, 1036
TatI WGTACW 2 cut(s) 353, 437
TfiI GAWTC 3 cut(s) 139, 467, 1109
Tru1I TTAA 2 cut(s) 120, 383
Tru9I TTAA 2 cut(s) 120, 383
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 593, 840
Tsp45I GTSAC 2 cut(s) 593, 840
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 91
XapI RAATTY 1 cut(s) 1036
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 2 cut(s) 307, 848
XhoI CTCGAG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 1068
XmnI GAANNNNTTC 5 cut(s) 155, 421, 471, 658, 753
XspI CTAG 5 cut(s) 56, 294, 779, 791, 869
ZrmI AGTACT 2 cut(s) 355, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.