Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005803

Physical Location & Seq

Genomic Coordinates Reverse (-)

11883423 .. 11890669

Gene Structure 7247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13210.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGTATGTCGGAGTTAATTGATATAGCTCCTTGTATCGATTGGTTGAACGGGCTTGAACCTGACATGTCGGTGAAGGTCCTGACCTGTTTAGACAATCCAAAGGATCTTGTTCAAGTTAGTACTGTCTCACGCACTTGGCATTATATTGTGGTAGAAAATGGTCTATGTAAGAAGCTGTGCTTGAGAATGTTTCCTCAGTTATCTAGAGTTGCTCATGTTGTCGAGTTACACGACTCTGATGCCAAAGAGTGTGCGGATGTTGGATCTAGCAATTCAAAGGAATGGGACACGTTGGAAAGGGAGCATAGAGTCTACGCCTTTTTAGCTCATGCATGTACATCTTTCCCTGCTAGTGATTGCATTTCAGGGGCAATCAGTGCTTCCAGCACCGACAATTTTCCGGAAGAAAGCATTAACAATACTCTTTACCCAAGCACGAGGGTTGGGCAGAGAGCTTCATACTGGTCAAGTAAAGGCCAAAAGAACCCTGCAGTGCCTGAGATGCTGACTTACAAGTTGAAGTCTGATCTTATTATAATTACTGAAATCAACGTACATCCTTTCCAAGCTTACTTCCAGCGTGGACAACCCATATATTCTGCCGCTGGCGTTCGATTTCATATGGGGCATGCCAAATTCCCTATTGATGTAGAGAGTGACCCAATGAAGGAATCATGCCATGATGACAAGTTTGAGTGGGCTTACACTTCACAAGTGTTCCCAATGGCTCAGAAGGACTGCTTGCAGACTTTTAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGAATTTTGCAGATTGAGTTAGTCGGGAGGGTTCAGAGACAAGAAATGGATGACCTGTTCTATATATGTGTGTCTCATGTTGAAGTCAAGGGGAAATCACTAGGACCTGCATTTAGTGTTGAAACCAATGTACCATCTGGGTTGTTTGTGTTGAAGAGACAAACCAAGTTCAACCAACCAAGCTCACCTGAGAACAAGTTCAATGCTAATTCCACTGGTGATTTGGAGAGACACGTTAGAGAAATGCTTCCCATTGTGCTGCATGGAAATGTAGTGGATTTTGAGGAATATTATGAATGGGATGATGCCGATTATGAGACAGACGAGGAGTTCGTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

376

Amino Acids

42.39

Weight (kDa)

4.99

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00755 AT4G00755
fragaria_vesca	FvH4_7g13210 FvH4_7g13210
malus_domestica	MD01G1051100.v1.1 MD07G1128000.v1.1
prunus_persica	Prupe.2G156300_v2.0.a1 Prupe.2G156300_v2.0.a1
pyrus_communis	pycom01g07580 pycom07g12350
rosa_chinensis	RchiOBHm_Chr1g0352351
rosa_laevigata	RLG00000028339
rosa_multiflora	Rmu_sc0002244.1_g000050 Rmu_ssc0000172.1_g000012
rosa_roxburghii	Rroxscaffold_4G00302970 Rroxscaffold_4G00302990
rosa_rugosa	Rorug01G0227600 Rorug01G0227700 Rorug01G0227800
rosa_samantha	Rh1AG241300 Rh1BG212200 Rh1BG212300 Rh1CG225100 Rh1DG238600 Rh1DG238700
rosa_wichuraiana	Rw1G020900 Rw1G020980 Rw1G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	2 cut(s)	257, 606
AclWI	GGATC	2 cut(s)	114, 274
AcsI	RAATTY	2 cut(s)	638, 789
AfaI	GTAC	4 cut(s)	124, 340, 558, 918
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflIII	ACRYGT	3 cut(s)	66, 291, 1018
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
AluBI	AGCT	7 cut(s)	29, 178, 329, 458, 572, 760, 969
AluI	AGCT	7 cut(s)	29, 178, 329, 458, 572, 760, 969
Alw26I	GTCTC	6 cut(s)	133, 817, 864, 937, 1009, 1097
AlwI	GGATC	2 cut(s)	114, 274
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	1045
ApoI	RAATTY	2 cut(s)	638, 789
ArsI	GACNNNNNNTTYG	1 cut(s)	1100
Asp700I	GAANNNNTTC	3 cut(s)	771, 983, 1032
AspS9I	GGNCC	2 cut(s)	79, 890
AsuHPI	GGTGA	3 cut(s)	85, 963, 1016
AvaII	GGWCC	2 cut(s)	79, 890
BaeI	ACNNNNGTAYC	2 cut(s)	900, 933
BauI	CACGAG	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	1032
BccI	CCATC	1 cut(s)	928
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcoDI	GTCTC	6 cut(s)	133, 817, 864, 937, 1009, 1097
BfaI	CTAG	4 cut(s)	207, 270, 354, 887
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	2 cut(s)	606, 1046
BlsI	GCNGC	2 cut(s)	607, 1047
BmcAI	AGTACT	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	79, 890
BmgT120I	GGNCC	2 cut(s)	79, 890
BmsI	GCATC	3 cut(s)	232, 495, 1081
BpuEI	CTTGAG	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	470, 770, 1006
BseAI	TCCGGA	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	4 cut(s)	265, 559, 841, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMII	CTCAG	4 cut(s)	212, 492, 746, 966
BseNI	ACTGG	3 cut(s)	470, 770, 1006
BseRI	GAGGAG	1 cut(s)	1127
BseXI	GCAGC	1 cut(s)	1032
BshFI	GGCC	1 cut(s)	480
BshVI	ATCGAT	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	6 cut(s)	133, 817, 864, 937, 1009, 1097
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	480
Bsp13I	TCCGGA	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	106, 266, 529
BspACI	CCGC	2 cut(s)	257, 606
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	4 cut(s)	211, 493, 745, 967
BspDI	ATCGAT	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	2 cut(s)	114, 274
BsrGI	TGTACA	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	470, 770, 1006
BssMI	GATC	3 cut(s)	106, 266, 529
BssSI	CACGAG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	935
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	610, 633, 746
BstDEI	CTNAG	4 cut(s)	198, 501, 732, 975
BstF5I	GGATG	4 cut(s)	265, 559, 841, 1093
BstKTI	GATC	3 cut(s)	109, 269, 532
BstMAI	GTCTC	6 cut(s)	133, 817, 864, 937, 1009, 1097
BstMBI	GATC	3 cut(s)	106, 266, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 380, 505
BstNSI	RCATGY	3 cut(s)	70, 339, 635
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	1032
BstX2I	RGATCY	2 cut(s)	106, 266
BstYI	RGATCY	2 cut(s)	106, 266
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	265, 559, 841, 1093
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	385, 501, 999
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	3 cut(s)	610, 633, 746
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	79, 890
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	4 cut(s)	123, 339, 557, 917
CviAII	CATG	9 cut(s)	67, 218, 332, 336, 632, 678, 683, 863, 1049
CviQI	GTAC	4 cut(s)	123, 339, 557, 917
DdeI	CTNAG	4 cut(s)	198, 501, 732, 975
DpnI	GATC	3 cut(s)	108, 268, 531
DpnII	GATC	3 cut(s)	106, 266, 529
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
Eco47I	GGWCC	2 cut(s)	79, 890
EcoO109I	RGGNCCY	2 cut(s)	79, 890
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	9 cut(s)	70, 221, 335, 339, 635, 681, 686, 866, 1052
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 728, 760
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	9 cut(s)	66, 217, 331, 335, 631, 677, 682, 862, 1048
FauNDI	CATATG	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	606, 1046
FokI	GGATG	4 cut(s)	272, 546, 848, 1100
Fsp4HI	GCNGC	2 cut(s)	606, 1046
FspBI	CTAG	4 cut(s)	207, 270, 354, 887
GluI	GCNGC	2 cut(s)	606, 1046
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	9 cut(s)	70, 221, 335, 339, 635, 681, 686, 866, 1052
HindIII	AAGCTT	2 cut(s)	570, 758
HinfI	GANTC	3 cut(s)	236, 312, 674
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	85, 963, 1016
Hpy166II	GTNNAC	2 cut(s)	316, 587
Hpy188I	TCNGA	5 cut(s)	13, 241, 529, 735, 822
Hpy188III	TCNNGA	5 cut(s)	82, 207, 404, 764, 811
Hpy8I	GTNNAC	2 cut(s)	316, 587
HpyAV	CCTTC	3 cut(s)	70, 664, 730
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	3 cut(s)	293, 555, 1020
HpyCH4V	TGCA	8 cut(s)	335, 363, 494, 748, 780, 796, 896, 1048
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 380, 505
HpyF3I	CTNAG	4 cut(s)	198, 501, 732, 975
HpySE526I	ACGT	3 cut(s)	293, 555, 1020
Hsp92II	CATG	9 cut(s)	70, 221, 335, 339, 635, 681, 686, 866, 1052
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	106, 266, 529
LmnI	GCTCC	2 cut(s)	34, 304
Lsp1109I	GCAGC	1 cut(s)	1032
LweI	GCATC	3 cut(s)	232, 495, 1081
MaeI	CTAG	4 cut(s)	207, 270, 354, 887
MaeII	ACGT	3 cut(s)	293, 555, 1020
MaeIII	GTNAC	2 cut(s)	228, 659
MalI	GATC	3 cut(s)	108, 268, 531
MboI	GATC	3 cut(s)	106, 266, 529
MboII	GAAGA	2 cut(s)	419, 952
MflI	RGATCY	2 cut(s)	106, 266
MluCI	AATT	7 cut(s)	18, 274, 397, 540, 638, 789, 994
MlyI	GAGTC	2 cut(s)	230, 321
MmeI	TCCRAC	2 cut(s)	244, 276
MnlI	CCTC	5 cut(s)	207, 435, 807, 1063, 1105
Mph1103I	ATGCAT	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	403
MroXI	GAANNNNTTC	3 cut(s)	771, 983, 1032
MseI	TTAA	3 cut(s)	17, 417, 756
MslI	CAYNNNNRTG	2 cut(s)	71, 1053
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	326, 380, 505
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	3 cut(s)	106, 266, 529
NlaIII	CATG	9 cut(s)	70, 221, 335, 339, 635, 681, 686, 866, 1052
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	3 cut(s)	70, 339, 635
PaeI	GCATGC	1 cut(s)	635
PciI	ACATGT	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 1116
PdmI	GAANNNNTTC	3 cut(s)	771, 983, 1032
PfeI	GAWTC	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	607, 1047
PleI	GAGTC	2 cut(s)	230, 320
PpsI	GAGTC	2 cut(s)	230, 320
PpuMI	RGGWCCY	2 cut(s)	79, 890
PscI	ACATGT	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	539
Psp5II	RGGWCCY	2 cut(s)	79, 890
PspPI	GGNCC	2 cut(s)	79, 890
PspPPI	RGGWCCY	2 cut(s)	79, 890
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	106, 266
RsaI	GTAC	4 cut(s)	124, 340, 558, 918
RsaNI	GTAC	4 cut(s)	123, 339, 557, 917
RseI	CAYNNNNRTG	2 cut(s)	71, 1053
SaqAI	TTAA	3 cut(s)	17, 417, 756
SatI	GCNGC	2 cut(s)	606, 1046
Sau3AI	GATC	3 cut(s)	106, 266, 529
Sau96I	GGNCC	2 cut(s)	79, 890
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	2 cut(s)	230, 321
SfaNI	GCATC	3 cut(s)	232, 495, 1081
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	79, 890
SmiMI	CAYNNNNRTG	2 cut(s)	71, 1053
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	7 cut(s)	18, 274, 397, 540, 638, 789, 994
SsiI	CCGC	2 cut(s)	257, 606
SspI	AATATT	1 cut(s)	1076
SspMI	CTAG	4 cut(s)	207, 270, 354, 887
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	3 cut(s)	296, 558, 1023
TaqI	TCGA	3 cut(s)	39, 225, 616
TasI	AATT	7 cut(s)	18, 274, 397, 540, 638, 789, 994
TatI	WGTACW	2 cut(s)	122, 338
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	3 cut(s)	17, 417, 756
Tru9I	TTAA	3 cut(s)	17, 417, 756
TscAI	CASTG	3 cut(s)	385, 501, 1006
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	1045
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	4 cut(s)	450, 611, 683, 1095
TspRI	CASTG	3 cut(s)	385, 501, 1006
VpaK11BI	GGWCC	2 cut(s)	79, 890
XapI	RAATTY	2 cut(s)	638, 789
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	3 cut(s)	70, 339, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	3 cut(s)	771, 983, 1032
XspI	CTAG	4 cut(s)	207, 270, 354, 887
ZrmI	AGTACT	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.